Wall clock time and date at job start Mon Mar 30 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 13 13 C 1.52585 * 109.22517 * 180.59897 * 12 2 1 14 14 C 1.53120 * 109.94458 * 168.96061 * 13 12 2 15 15 S 1.81754 * 108.80633 * 63.08486 * 14 13 12 16 16 O 1.42101 * 109.46964 * 62.70775 * 15 14 13 17 17 C 1.81754 * 102.22022 * 306.71315 * 15 14 13 18 18 C 1.52581 * 109.22742 * 59.39983 * 12 2 1 19 19 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 22 22 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 23 23 H 1.08997 * 109.21899 * 299.99355 * 12 2 1 24 24 H 1.09002 * 109.38643 * 289.14598 * 13 12 2 25 25 H 1.08997 * 109.39453 * 48.85171 * 13 12 2 26 26 H 1.08995 * 109.60944 * 303.27680 * 14 13 12 27 27 H 1.09002 * 109.67643 * 182.93097 * 14 13 12 28 28 H 1.08999 * 109.57276 * 293.46237 * 17 15 14 29 29 H 1.08991 * 109.68072 * 173.14018 * 17 15 14 30 30 H 1.08999 * 109.38720 * 311.14766 * 18 12 2 31 31 H 1.09006 * 109.38788 * 70.94579 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0400 -0.7212 -1.2494 13 6 3.5658 -0.7310 -1.2362 14 6 4.0914 -1.6755 -2.3206 15 16 3.5772 -1.0453 -3.9460 16 8 4.1640 0.2299 -4.1669 17 6 1.7817 -0.8578 -3.7355 18 6 1.5161 -0.0062 -2.4913 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 0.7096 1.1617 3.4844 23 1 1.6745 -1.7480 -1.2452 24 1 3.9357 0.2772 -1.4230 25 1 3.9171 -1.0689 -0.2613 26 1 3.6789 -2.6728 -2.1684 27 1 5.1795 -1.7191 -2.2734 28 1 1.3242 -1.8392 -3.6108 29 1 1.3587 -0.3663 -4.6116 30 1 0.4436 0.1592 -2.3882 31 1 2.0218 0.9536 -2.5967 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260843971.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:22 Heat of formation + Delta-G solvation = -84.395378 kcal Electronic energy + Delta-G solvation = -13249.262201 eV Core-core repulsion = 11041.460591 eV Total energy + Delta-G solvation = -2207.801610 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.07796 -36.67022 -35.16398 -32.51421 -32.08558 -27.47934 -27.09325 -23.85125 -22.60942 -20.72752 -18.69537 -18.19680 -16.98736 -16.41529 -16.05744 -15.21528 -14.93829 -14.75757 -14.44958 -14.16489 -13.70543 -13.61377 -12.96711 -12.75034 -12.64026 -12.52351 -12.51421 -12.19162 -12.09103 -11.80356 -11.40020 -10.95985 -10.91272 -10.49955 -10.36480 -9.06397 -8.10034 -6.23561 0.93642 1.38695 1.40182 1.47448 1.78670 2.40781 3.00069 3.17447 3.87757 3.98952 4.03546 4.19047 4.38025 4.55349 4.68096 4.76018 4.84892 4.96223 5.04154 5.18518 5.20737 5.29354 5.33492 5.44379 5.49254 5.62020 5.94505 6.13695 6.35472 6.88455 7.44408 8.95076 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.048441 B = 0.008580 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.883735 B = 3262.806651 C = 3604.119654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.042 3.958 3 H -0.027 1.027 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.004 3.996 7 N -0.924 5.924 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.264 1.264 12 C -0.081 4.081 13 C -0.108 4.108 14 C -0.435 4.435 15 S 1.304 4.696 16 O -0.931 6.931 17 C -0.433 4.433 18 C -0.118 4.118 19 H 0.048 0.952 20 H 0.036 0.964 21 H 0.030 0.970 22 H 0.258 0.742 23 H 0.085 0.915 24 H 0.017 0.983 25 H 0.063 0.937 26 H 0.153 0.847 27 H 0.111 0.889 28 H 0.156 0.844 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -10.582 -12.888 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.024 3.976 3 H -0.009 1.009 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.194 4.194 7 N -0.565 5.565 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.189 1.189 12 C -0.099 4.099 13 C -0.146 4.146 14 C -0.572 4.572 15 S 1.504 4.496 16 O -0.927 6.927 17 C -0.571 4.571 18 C -0.157 4.157 19 H 0.067 0.933 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.067 0.933 23 H 0.104 0.896 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.171 0.829 27 H 0.129 0.871 28 H 0.174 0.826 29 H 0.135 0.865 30 H 0.090 0.910 31 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.804 -10.253 -13.566 17.234 hybrid contribution -0.315 1.823 3.000 3.525 sum 2.489 -8.430 -10.565 13.743 Atomic orbital electron populations 1.21715 0.98261 0.99241 0.99434 1.18650 0.93000 0.93351 0.92598 1.00860 1.21551 1.30547 1.12335 0.91436 0.91852 1.25837 0.95521 0.95806 1.02245 1.70050 1.38181 1.24487 1.23745 0.85671 0.78607 0.79070 0.78685 1.19950 1.21445 1.18882 1.21147 0.94119 1.00346 0.94277 1.21373 0.96059 0.97071 1.00144 1.27694 1.08114 1.07782 1.13597 1.68902 0.84667 1.01073 0.94988 1.92963 1.72856 1.47148 1.79738 1.27664 1.20013 1.07830 1.01550 1.21561 1.02365 0.97367 0.94363 0.93300 0.94516 0.95129 0.93287 0.89628 0.96424 0.91845 0.82898 0.87085 0.82641 0.86500 0.91016 0.95947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 8.62 71.98 0.62 -5.70 16 2 C 0.04 2.18 1.89 -11.54 -0.02 2.16 16 3 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 4 C -0.52 -28.58 7.66 25.60 0.20 -28.38 16 5 H 0.06 3.31 6.72 -2.91 -0.02 3.29 16 6 C 0.00 0.20 5.30 84.66 0.45 0.65 16 7 N -0.92 -55.43 11.32 21.45 0.24 -55.19 16 8 Si 0.95 44.09 29.54 68.60 2.03 46.11 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 12 C -0.08 -3.19 1.49 -11.07 -0.02 -3.21 16 13 C -0.11 -4.18 4.94 30.50 0.15 -4.03 16 14 C -0.43 -10.78 6.44 72.02 0.46 -10.32 16 15 S 1.30 28.75 13.75 -56.49 -0.78 27.97 16 16 O -0.93 -35.52 18.14 -148.98 -2.70 -38.22 16 17 C -0.43 -9.74 6.44 72.01 0.46 -9.27 16 18 C -0.12 -4.18 4.94 30.49 0.15 -4.02 16 19 H 0.05 2.71 6.07 -2.39 -0.01 2.69 16 20 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.03 1.33 6.17 -2.38 -0.01 1.31 16 22 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 23 H 0.09 3.02 8.08 -2.39 -0.02 3.00 16 24 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 25 H 0.06 2.69 6.25 -2.39 -0.01 2.68 16 26 H 0.15 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.16 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 2.52 5.84 -2.39 -0.01 2.51 16 31 H 0.02 0.92 8.05 -2.38 -0.02 0.90 16 Total: -1.00 -78.04 254.19 2.34 -75.70 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.10 Total: 5.76 kcal Atomic # 6 Polarization: -64.59 SS G_CDS: 2.46 Total: -62.13 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.24 Total: -55.19 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -2.70 Total: -38.22 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 28.75 SS G_CDS: -0.78 Total: 27.97 kcal Total: -78.04 2.34 -75.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260843971.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.697 kcal (2) G-P(sol) polarization free energy of solvation -78.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds