Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47183 * 2 1 4 4 C 1.50692 * 109.47434 * 239.99276 * 2 1 3 5 5 H 1.07999 * 120.00012 * 273.30393 * 4 2 1 6 6 C 1.37874 * 120.00258 * 93.30531 * 4 2 1 7 7 N 1.31513 * 120.00275 * 182.11786 * 6 4 2 8 8 Si 1.86798 * 119.99707 * 2.11953 * 6 4 2 9 9 H 1.48499 * 109.47388 * 84.50442 * 8 6 4 10 10 H 1.48500 * 109.47282 * 204.50395 * 8 6 4 11 11 H 1.48504 * 109.47142 * 324.50237 * 8 6 4 12 12 C 1.53007 * 109.46785 * 119.98956 * 2 1 3 13 13 C 1.52576 * 109.22400 * 179.97438 * 12 2 1 14 14 C 1.53098 * 109.95576 * 190.99776 * 13 12 2 15 15 S 1.81748 * 108.84156 * 296.97958 * 14 13 12 16 16 O 1.42105 * 109.46981 * 169.25804 * 15 14 13 17 17 C 1.81744 * 102.22154 * 53.26484 * 15 14 13 18 18 C 1.52576 * 109.22917 * 301.24243 * 12 2 1 19 19 H 1.09003 * 109.46406 * 66.71920 * 1 2 3 20 20 H 1.09003 * 109.47250 * 186.71885 * 1 2 3 21 21 H 1.09000 * 109.47552 * 306.71946 * 1 2 3 22 22 H 0.97000 * 119.99895 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.18476 * 60.62399 * 12 2 1 24 24 H 1.09005 * 109.38838 * 70.85692 * 13 12 2 25 25 H 1.08992 * 109.39663 * 311.15132 * 13 12 2 26 26 H 1.09004 * 109.57970 * 177.17211 * 14 13 12 27 27 H 1.08998 * 109.68240 * 56.84906 * 14 13 12 28 28 H 1.09004 * 109.57922 * 66.54332 * 17 15 14 29 29 H 1.09000 * 109.57910 * 186.92521 * 17 15 14 30 30 H 1.08999 * 109.38999 * 289.15025 * 18 12 2 31 31 H 1.08998 * 109.39449 * 48.94930 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1616 -1.7827 -1.2197 6 6 2.3272 0.0081 -2.3694 7 7 2.7258 -0.6162 -3.4561 8 14 2.1603 1.8687 -2.3692 9 1 3.4004 2.4768 -1.8236 10 1 1.9445 2.3465 -3.7585 11 1 1.0034 2.2618 -1.5252 12 6 2.0400 -0.7211 1.2495 13 6 3.5657 -0.7184 1.2435 14 6 4.0941 -1.6612 2.3279 15 16 3.5662 -1.0413 3.9528 16 8 3.8301 -2.0251 4.9436 17 6 1.7703 -0.8687 3.7338 18 6 1.5030 -0.0155 2.4911 19 1 -0.3632 0.4062 -0.9441 20 1 -0.3634 -1.0206 0.1202 21 1 -0.3634 0.6144 0.8237 22 1 2.9328 -0.1106 -4.2576 23 1 1.6832 -1.7510 1.2393 24 1 3.9265 0.2922 1.4354 25 1 3.9245 -1.0502 0.2693 26 1 5.1829 -1.6931 2.2853 27 1 3.6930 -2.6625 2.1711 28 1 1.3219 -1.8537 3.6034 29 1 1.3405 -0.3829 4.6097 30 1 1.9981 0.9492 2.6018 31 1 0.4293 0.1390 2.3838 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260843972.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = -86.054568 kcal Electronic energy + Delta-G solvation = -13194.549820 eV Core-core repulsion = 10986.676262 eV Total energy + Delta-G solvation = -2207.873558 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.03277 -36.76531 -34.89058 -32.89639 -32.24321 -27.47472 -27.15084 -23.72085 -22.43761 -20.56477 -19.02942 -18.24793 -16.83111 -16.29499 -15.95596 -15.38354 -15.00527 -14.83742 -14.56388 -14.36178 -13.84126 -13.43408 -13.28391 -12.80974 -12.71335 -12.42622 -12.28710 -12.14994 -11.75143 -11.67885 -11.24714 -10.95810 -10.84784 -10.58664 -10.39118 -9.18290 -8.18520 -6.21020 0.75592 1.44558 1.47470 1.57723 1.69192 2.45702 2.87165 3.18876 3.87383 4.02800 4.09795 4.27985 4.40864 4.53586 4.62621 4.81267 4.85622 5.00762 5.02427 5.16900 5.22826 5.30316 5.34311 5.46506 5.63687 5.73642 5.85521 5.90281 6.43650 6.86267 7.43887 8.99135 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.047035 B = 0.008938 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.162145 B = 3131.865894 C = 3349.731400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.011 3.989 3 H 0.049 0.951 4 C -0.500 4.500 5 H 0.017 0.983 6 C 0.002 3.998 7 N -0.962 5.962 8 Si 0.942 3.058 9 H -0.254 1.254 10 H -0.302 1.302 11 H -0.236 1.236 12 C -0.086 4.086 13 C -0.088 4.088 14 C -0.431 4.431 15 S 1.292 4.708 16 O -0.933 6.933 17 C -0.428 4.428 18 C -0.096 4.096 19 H 0.028 0.972 20 H 0.031 0.969 21 H 0.068 0.932 22 H 0.261 0.739 23 H 0.029 0.971 24 H 0.105 0.895 25 H 0.051 0.949 26 H 0.122 0.878 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.113 0.887 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 8.457 13.552 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.007 4.007 3 H 0.067 0.933 4 C -0.538 4.538 5 H 0.035 0.965 6 C -0.193 4.193 7 N -0.603 5.603 8 Si 0.765 3.235 9 H -0.179 1.179 10 H -0.230 1.230 11 H -0.159 1.159 12 C -0.105 4.105 13 C -0.126 4.126 14 C -0.569 4.569 15 S 1.493 4.507 16 O -0.929 6.929 17 C -0.567 4.567 18 C -0.134 4.134 19 H 0.047 0.953 20 H 0.050 0.950 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.124 0.876 25 H 0.070 0.930 26 H 0.140 0.860 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.156 0.844 30 H 0.131 0.869 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.445 8.632 14.226 16.646 hybrid contribution -0.987 -2.259 -1.546 2.910 sum -0.542 6.373 12.680 14.201 Atomic orbital electron populations 1.22028 0.97985 0.99842 0.99877 1.19175 0.92994 0.96315 0.92263 0.93309 1.21246 1.42067 0.93512 0.96971 0.96483 1.26035 0.94571 1.03940 0.94794 1.70101 1.48844 1.38139 1.03238 0.85821 0.80948 0.79664 0.77042 1.17877 1.22958 1.15909 1.21152 0.95422 0.98415 0.95525 1.21158 0.94810 0.99796 0.96837 1.27600 1.08420 1.05341 1.15491 1.69411 0.89443 1.11716 0.80156 1.92927 1.81407 1.67086 1.51430 1.27528 1.18743 1.04850 1.05604 1.21410 1.03414 0.99209 0.89330 0.95330 0.95027 0.91332 0.93017 0.95237 0.87641 0.92997 0.85989 0.92671 0.91913 0.84352 0.86857 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.55 71.98 0.62 -4.59 16 2 C 0.01 0.46 1.48 -11.54 -0.02 0.44 16 3 H 0.05 1.84 5.53 -2.39 -0.01 1.83 16 4 C -0.50 -26.81 7.40 25.60 0.19 -26.62 16 5 H 0.02 1.05 8.06 -2.91 -0.02 1.03 16 6 C 0.00 0.10 5.47 84.65 0.46 0.57 16 7 N -0.96 -59.40 13.96 21.45 0.30 -59.10 16 8 Si 0.94 41.09 26.62 68.60 1.83 42.92 16 9 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 10 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.24 -9.18 6.88 99.48 0.68 -8.49 16 12 C -0.09 -2.89 1.52 -11.07 -0.02 -2.91 16 13 C -0.09 -2.76 4.97 30.49 0.15 -2.61 16 14 C -0.43 -12.11 6.44 72.01 0.46 -11.65 16 15 S 1.29 29.47 13.75 -56.49 -0.78 28.69 16 16 O -0.93 -33.69 18.14 -148.98 -2.70 -36.39 16 17 C -0.43 -9.37 6.44 72.01 0.46 -8.91 16 18 C -0.10 -2.19 4.93 30.48 0.15 -2.04 16 19 H 0.03 1.13 7.80 -2.39 -0.02 1.11 16 20 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.07 1.98 6.53 -2.39 -0.02 1.96 16 22 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 23 H 0.03 1.13 8.08 -2.39 -0.02 1.12 16 24 H 0.11 2.49 8.06 -2.38 -0.02 2.47 16 25 H 0.05 2.11 6.82 -2.39 -0.02 2.09 16 26 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.11 1.78 8.06 -2.39 -0.02 1.76 16 31 H 0.08 1.82 5.97 -2.39 -0.01 1.80 16 Total: -1.00 -75.91 254.66 2.18 -73.73 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.07 Total: 8.48 kcal Atomic # 6 Polarization: -60.78 SS G_CDS: 2.46 Total: -58.32 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.30 Total: -59.10 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -2.70 Total: -36.39 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.83 Total: 42.92 kcal Atomic # 16 Polarization: 29.47 SS G_CDS: -0.78 Total: 28.69 kcal Total: -75.91 2.18 -73.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260843972.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.328 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds