Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99903 * 2 1 4 4 H 1.48507 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47126 * 299.99604 * 3 2 1 6 6 H 1.48500 * 109.47189 * 60.00337 * 3 2 1 7 7 C 1.37876 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00189 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47007 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.21140 * 305.39166 * 10 9 7 12 12 C 1.53353 * 109.60861 * 185.86591 * 10 9 7 13 13 C 1.54963 * 117.04895 * 197.68065 * 12 10 9 14 14 C 1.50366 * 116.53608 * 313.69876 * 13 12 10 15 15 S 1.84953 * 109.16879 * 90.84843 * 14 13 12 16 16 O 1.42103 * 109.47082 * 176.18963 * 15 14 13 17 17 C 1.74439 * 101.83435 * 291.99022 * 15 14 13 18 18 C 1.49724 * 109.34263 * 64.99889 * 10 9 7 19 19 H 0.97001 * 119.99989 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47398 * 59.99731 * 9 7 2 21 21 H 1.09002 * 109.46583 * 299.99590 * 9 7 2 22 22 H 1.09000 * 107.97768 * 75.69800 * 12 10 9 23 23 H 1.08993 * 107.77840 * 319.50319 * 12 10 9 24 24 H 1.08998 * 108.04107 * 191.91773 * 13 12 10 25 25 H 1.09001 * 108.03907 * 75.47887 * 13 12 10 26 26 H 1.09007 * 109.51855 * 330.94434 * 14 13 12 27 27 H 1.09000 * 109.52490 * 210.75536 * 14 13 12 28 28 H 1.09002 * 108.41875 * 300.72819 * 17 15 14 29 29 H 1.09003 * 108.41667 * 183.48271 * 17 15 14 30 30 H 1.09002 * 110.37750 * 100.93049 * 18 10 9 31 31 H 1.08995 * 110.37266 * 338.70733 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 1 2.9313 -3.5473 -0.8385 12 6 1.4874 -4.9871 -0.1471 13 6 2.2452 -6.2800 0.2471 14 6 3.6492 -6.4207 -0.2725 15 16 4.8277 -5.7067 0.9613 16 8 6.1616 -5.9151 0.5178 17 6 4.4463 -4.0065 0.8780 18 6 3.0213 -3.6510 1.2809 19 1 -0.4850 0.8401 0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5566 0.8904 22 1 1.1774 -5.0832 -1.1877 23 1 0.5872 -4.9255 0.4643 24 1 1.6665 -7.1323 -0.1090 25 1 2.2812 -6.3316 1.3353 26 1 3.7430 -5.8858 -1.2177 27 1 3.8770 -7.4755 -0.4256 28 1 4.6100 -3.6665 -0.1446 29 1 5.1333 -3.4671 1.5301 30 1 2.6251 -4.3956 1.9713 31 1 2.9911 -2.6603 1.7343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260881245.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -84.946619 kcal Electronic energy + Delta-G solvation = -13038.211033 eV Core-core repulsion = 10830.385519 eV Total energy + Delta-G solvation = -2207.825514 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.98242 -36.77047 -35.05065 -33.61137 -31.55250 -28.68571 -25.92780 -24.34209 -22.88392 -20.08298 -18.56204 -18.30223 -16.92940 -16.52952 -16.18336 -15.75391 -15.48400 -14.59464 -14.31332 -14.25584 -13.79237 -13.58577 -13.16883 -12.88118 -12.70226 -12.67084 -12.33700 -12.13595 -12.00514 -11.51758 -11.15448 -10.89716 -10.77093 -10.63807 -10.54235 -9.17369 -8.20224 -6.28196 0.80053 1.34563 1.36304 1.47568 1.70747 2.38128 2.89141 3.13264 3.80009 3.91678 4.04221 4.20280 4.33729 4.49040 4.66793 4.76531 4.95968 4.96966 5.04035 5.25802 5.31304 5.38735 5.43137 5.50584 5.59711 5.66006 5.91547 5.93301 6.29742 6.88746 7.39798 8.91504 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.043146 B = 0.008162 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.800399 B = 3429.664975 C = 3932.246896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.083 4.083 11 H 0.031 0.969 12 C -0.118 4.118 13 C -0.088 4.088 14 C -0.417 4.417 15 S 1.324 4.676 16 O -0.936 6.936 17 C -0.480 4.480 18 C -0.068 4.068 19 H 0.262 0.738 20 H -0.020 1.020 21 H 0.006 0.994 22 H 0.035 0.965 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.126 0.874 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.770 -13.317 5.712 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.102 4.102 11 H 0.049 0.951 12 C -0.156 4.156 13 C -0.127 4.127 14 C -0.555 4.555 15 S 1.524 4.476 16 O -0.932 6.932 17 C -0.617 4.617 18 C -0.106 4.106 19 H 0.071 0.929 20 H -0.001 1.001 21 H 0.025 0.975 22 H 0.054 0.946 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.353 -13.632 6.264 15.621 hybrid contribution 0.556 2.526 -2.724 3.757 sum 4.909 -11.106 3.540 12.648 Atomic orbital electron populations 1.70076 1.07455 1.27441 1.52167 1.25843 0.95663 1.02785 0.95281 0.85584 0.78889 0.79849 0.77846 1.19406 1.20815 1.19955 1.21651 0.93114 0.92439 1.49436 0.92918 1.19122 0.94090 0.92504 0.94905 1.20871 0.97425 0.94779 0.97100 0.95069 1.22053 0.99445 0.93137 1.00963 1.20875 0.91781 0.96650 1.03371 1.27314 1.08020 1.09044 1.11135 1.68761 0.83213 0.85182 1.10433 1.92924 1.34445 1.81994 1.83793 1.27306 1.05934 1.22411 1.06092 1.20524 0.89344 1.03186 0.97523 0.92881 1.00124 0.97543 0.94588 0.91248 0.89372 0.87751 0.91962 0.85551 0.92041 0.87086 0.86689 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.53 -29.47 7.99 25.60 0.20 -29.27 16 8 H 0.05 2.90 7.52 -2.91 -0.02 2.88 16 9 C 0.03 1.55 4.25 29.85 0.13 1.68 16 10 C -0.08 -3.13 1.90 -11.73 -0.02 -3.15 16 11 H 0.03 1.29 6.71 -2.39 -0.02 1.27 16 12 C -0.12 -3.40 5.02 31.38 0.16 -3.25 16 13 C -0.09 -1.64 5.05 30.41 0.15 -1.49 16 14 C -0.42 -8.77 6.22 71.13 0.44 -8.33 16 15 S 1.32 30.09 13.16 -56.49 -0.74 29.34 16 16 O -0.94 -33.98 18.12 -148.98 -2.70 -36.68 16 17 C -0.48 -14.02 5.40 71.75 0.39 -13.64 16 18 C -0.07 -2.11 5.03 29.31 0.15 -1.96 16 19 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 20 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 21 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 22 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.95 7.93 -2.39 -0.02 1.93 16 24 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.10 1.21 6.83 -2.39 -0.02 1.19 16 26 H 0.06 1.65 8.05 -2.38 -0.02 1.63 16 27 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.17 6.80 -4.59 -0.03 2.14 16 29 H 0.11 3.10 8.14 -4.59 -0.04 3.06 16 30 H 0.11 2.45 6.50 -2.39 -0.02 2.44 16 31 H 0.06 2.37 6.77 -2.39 -0.02 2.36 16 Total: -1.00 -76.19 256.01 1.99 -74.20 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: 1.06 Total: 0.99 kcal Atomic # 6 Polarization: -60.89 SS G_CDS: 2.06 Total: -58.83 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -2.70 Total: -36.68 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 30.09 SS G_CDS: -0.74 Total: 29.34 kcal Total: -76.19 1.99 -74.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260881245.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.747 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds