Wall clock time and date at job start Mon Mar 30 2020 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99655 * 2 1 4 4 H 1.48508 * 109.46935 * 239.99873 * 3 2 1 5 5 H 1.48493 * 109.47318 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46902 * 120.00087 * 3 2 1 7 7 C 1.37872 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99749 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47379 * 179.97438 * 9 7 2 11 11 C 1.32160 * 124.46433 * 94.99912 * 10 9 7 12 12 C 1.51094 * 108.26157 * 180.02562 * 11 10 9 13 13 C 1.50921 * 105.45730 * 0.02562 * 12 11 10 14 14 C 1.39573 * 106.32046 * 359.97438 * 13 12 11 15 15 C 1.39715 * 119.21331 * 180.02562 * 14 13 12 16 16 C 1.37977 * 120.01350 * 0.02562 * 15 14 13 17 17 C 1.38236 * 120.43981 * 359.95987 * 16 15 14 18 18 C 1.37995 * 133.22624 * 180.02562 * 13 12 11 19 19 O 1.35917 * 120.07859 * 359.97232 * 18 13 12 20 20 H 0.96999 * 120.00180 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47356 * 60.00386 * 9 7 2 22 22 H 1.09005 * 109.47438 * 300.00472 * 9 7 2 23 23 H 1.08000 * 125.86740 * 0.02789 * 11 10 9 24 24 H 1.09002 * 110.24627 * 241.00441 * 12 11 10 25 25 H 1.08995 * 110.24659 * 118.99643 * 12 11 10 26 26 H 1.07999 * 119.99425 * 179.72656 * 15 14 13 27 27 H 1.07998 * 119.78469 * 179.97438 * 16 15 14 28 28 H 1.07994 * 119.98148 * 179.97438 * 17 16 15 29 29 H 0.96697 * 113.99887 * 90.00319 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6445 -0.0018 11 6 2.6450 -4.2752 1.0831 12 6 3.6159 -5.3535 0.6619 13 6 3.7027 -5.2518 -0.8414 14 6 2.8531 -4.2089 -1.2136 15 6 2.7280 -3.8810 -2.5660 16 6 3.4393 -4.5852 -3.5156 17 6 4.2791 -5.6167 -3.1392 18 6 4.4111 -5.9517 -1.7967 19 8 5.2359 -6.9663 -1.4257 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.3419 -4.0572 2.0965 24 1 3.2398 -6.3344 0.9530 25 1 4.5940 -5.1759 1.1087 26 1 2.0707 -3.0792 -2.8685 27 1 3.3395 -4.3288 -4.5600 28 1 4.8320 -6.1633 -3.8887 29 1 4.8057 -7.8318 -1.3954 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260884275.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:38 Heat of formation + Delta-G solvation = -7.288801 kcal Electronic energy + Delta-G solvation = -13607.874955 eV Core-core repulsion = 11267.972985 eV Total energy + Delta-G solvation = -2339.901969 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.08858 -37.29670 -35.23378 -33.09972 -30.54726 -28.95541 -27.91061 -25.63703 -22.66465 -21.91492 -20.85126 -18.91621 -16.88340 -16.25573 -15.58248 -15.20711 -14.93362 -14.42233 -13.91236 -13.56132 -13.11923 -12.28985 -12.03096 -11.87780 -11.63273 -11.33811 -11.14766 -10.83020 -10.58626 -10.51010 -10.19473 -9.78124 -9.48684 -8.85161 -8.40638 -8.28114 -7.46831 -6.03265 -4.06544 1.35813 1.63043 3.09533 3.32822 3.36704 3.41041 4.18921 4.42981 4.50233 4.81798 5.16256 5.31115 5.33048 5.51437 5.77474 5.85382 5.94333 6.00765 6.18856 6.26482 6.50106 6.68504 6.79174 7.00166 7.12737 7.14494 7.44420 7.62875 7.82341 7.88188 7.93143 8.34938 8.98427 9.57199 11.06769 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.039067 B = 0.007825 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.542181 B = 3577.460529 C = 3856.456623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.058 3.942 10 C -0.049 4.049 11 C -0.197 4.197 12 C -0.049 4.049 13 C -0.137 4.137 14 C -0.031 4.031 15 C -0.096 4.096 16 C -0.112 4.112 17 C -0.155 4.155 18 C 0.110 3.890 19 O -0.500 6.500 20 H 0.262 0.738 21 H 0.027 0.973 22 H 0.030 0.970 23 H 0.139 0.861 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.131 0.869 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -11.565 -3.393 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.021 3.979 10 C -0.049 4.049 11 C -0.215 4.215 12 C -0.085 4.085 13 C -0.137 4.137 14 C -0.031 4.031 15 C -0.114 4.114 16 C -0.131 4.131 17 C -0.173 4.173 18 C 0.067 3.933 19 O -0.309 6.309 20 H 0.072 0.928 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.157 0.843 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.149 0.851 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.975 -10.998 -3.363 12.960 hybrid contribution 0.165 0.631 -0.090 0.658 sum 6.140 -10.367 -3.453 12.534 Atomic orbital electron populations 1.69947 1.06002 1.26883 1.50614 1.24992 0.94860 0.99170 0.95234 0.86616 0.79554 0.82886 0.78762 1.20179 1.21239 1.20170 1.21006 0.93009 0.89926 1.50869 0.92634 1.18076 0.92354 0.89259 0.98188 1.21348 0.97224 0.96003 0.90291 1.23331 1.00808 0.98681 0.98683 1.19755 0.99634 0.98893 0.90213 1.20872 0.97786 0.98642 0.96409 1.19866 0.95353 0.94170 0.93699 1.21098 0.99425 0.99316 0.91590 1.20839 0.96966 0.95923 0.99328 1.21241 1.01016 1.00504 0.94564 1.17624 0.93121 0.91833 0.90769 1.84822 1.37500 1.18065 1.90553 0.92816 0.95452 0.95191 0.84332 0.89678 0.89252 0.85118 0.85796 0.85827 0.76352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.74 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.51 -14.42 9.09 -34.44 -0.31 -14.73 15 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 15 9 C 0.06 1.51 5.38 -29.04 -0.16 1.35 15 10 C -0.05 -1.08 5.33 -102.79 -0.55 -1.63 15 11 C -0.20 -3.80 10.91 -36.04 -0.39 -4.19 15 12 C -0.05 -0.81 6.76 -28.73 -0.19 -1.00 15 13 C -0.14 -2.45 6.31 -104.11 -0.66 -3.11 15 14 C -0.03 -0.63 6.17 -105.08 -0.65 -1.27 15 15 C -0.10 -1.80 10.08 -39.13 -0.39 -2.20 15 16 C -0.11 -1.74 10.01 -39.68 -0.40 -2.14 15 17 C -0.15 -2.29 10.00 -39.30 -0.39 -2.68 15 18 C 0.11 1.76 6.69 -39.39 -0.26 1.50 15 19 O -0.50 -6.74 13.50 -19.48 -0.26 -7.00 15 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.03 0.81 8.13 -51.93 -0.42 0.39 15 23 H 0.14 2.47 8.06 -52.49 -0.42 2.05 15 24 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 26 H 0.13 2.50 8.06 -52.49 -0.42 2.08 15 27 H 0.12 1.55 8.06 -52.49 -0.42 1.12 15 28 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 29 H 0.38 3.18 9.06 45.56 0.41 3.59 15 LS Contribution 259.73 15.07 3.91 3.91 Total: -1.00 -31.44 259.73 -7.60 -39.04 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.51 Total: 1.62 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -4.45 Total: -28.53 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.26 Total: -7.00 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.44 -7.60 -39.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260884275.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.748 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds