Wall clock time and date at job start Mon Mar 30 2020 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99655 * 2 1 4 4 H 1.48508 * 109.46935 * 239.99873 * 3 2 1 5 5 H 1.48493 * 109.47318 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46902 * 120.00087 * 3 2 1 7 7 C 1.37872 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99749 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47379 * 179.97438 * 9 7 2 11 11 C 1.32160 * 124.46433 * 94.99912 * 10 9 7 12 12 C 1.51094 * 108.26157 * 180.02562 * 11 10 9 13 13 C 1.50921 * 105.45730 * 0.02562 * 12 11 10 14 14 C 1.39573 * 106.32046 * 359.97438 * 13 12 11 15 15 C 1.39715 * 119.21331 * 180.02562 * 14 13 12 16 16 C 1.37977 * 120.01350 * 0.02562 * 15 14 13 17 17 C 1.38236 * 120.43981 * 359.95987 * 16 15 14 18 18 C 1.37995 * 133.22624 * 180.02562 * 13 12 11 19 19 O 1.35917 * 120.07859 * 359.97232 * 18 13 12 20 20 H 0.96999 * 120.00180 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47356 * 60.00386 * 9 7 2 22 22 H 1.09005 * 109.47438 * 300.00472 * 9 7 2 23 23 H 1.08000 * 125.86740 * 0.02789 * 11 10 9 24 24 H 1.09002 * 110.24627 * 241.00441 * 12 11 10 25 25 H 1.08995 * 110.24659 * 118.99643 * 12 11 10 26 26 H 1.07999 * 119.99425 * 179.72656 * 15 14 13 27 27 H 1.07998 * 119.78469 * 179.97438 * 16 15 14 28 28 H 1.07994 * 119.98148 * 179.97438 * 17 16 15 29 29 H 0.96697 * 113.99887 * 90.00319 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6445 -0.0018 11 6 2.6450 -4.2752 1.0831 12 6 3.6159 -5.3535 0.6619 13 6 3.7027 -5.2518 -0.8414 14 6 2.8531 -4.2089 -1.2136 15 6 2.7280 -3.8810 -2.5660 16 6 3.4393 -4.5852 -3.5156 17 6 4.2791 -5.6167 -3.1392 18 6 4.4111 -5.9517 -1.7967 19 8 5.2359 -6.9663 -1.4257 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.3419 -4.0572 2.0965 24 1 3.2398 -6.3344 0.9530 25 1 4.5940 -5.1759 1.1087 26 1 2.0707 -3.0792 -2.8685 27 1 3.3395 -4.3288 -4.5600 28 1 4.8320 -6.1633 -3.8887 29 1 4.8057 -7.8318 -1.3954 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260884275.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:38 Heat of formation + Delta-G solvation = -27.236834 kcal Electronic energy + Delta-G solvation = -13608.739966 eV Core-core repulsion = 11267.972985 eV Total energy + Delta-G solvation = -2340.766981 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.40275 -38.52207 -36.54608 -35.17495 -32.25609 -30.35210 -29.39018 -27.35941 -24.57529 -23.27954 -22.13671 -20.23390 -18.56870 -18.13181 -17.01924 -16.47830 -16.34239 -16.11955 -15.28792 -14.91225 -14.59737 -14.27009 -13.75904 -13.24409 -13.10433 -12.89310 -12.85723 -12.48288 -12.43450 -12.00384 -11.73491 -11.56906 -11.36613 -10.61425 -10.44322 -9.53727 -8.94480 -8.21463 -6.34621 0.01938 0.37013 1.36734 1.40073 1.47857 1.64730 2.39418 2.88439 3.08658 3.32607 3.54064 3.77750 4.10316 4.15245 4.47980 4.58091 4.68072 4.77603 4.88722 4.91130 5.03836 5.25224 5.29418 5.41009 5.50154 5.69727 5.72290 5.80083 5.97156 6.06996 6.22899 6.77167 6.91074 7.33767 8.87766 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.039067 B = 0.007825 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.542181 B = 3577.460529 C = 3856.456623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.049 0.951 9 C 0.068 3.932 10 C -0.093 4.093 11 C -0.180 4.180 12 C -0.042 4.042 13 C -0.148 4.148 14 C -0.065 4.065 15 C -0.127 4.127 16 C -0.103 4.103 17 C -0.146 4.146 18 C 0.120 3.880 19 O -0.500 6.500 20 H 0.266 0.734 21 H -0.002 1.002 22 H 0.005 0.995 23 H 0.146 0.854 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.154 0.846 28 H 0.161 0.839 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.012 -12.922 -3.883 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.067 0.933 9 C 0.032 3.968 10 C -0.093 4.093 11 C -0.198 4.198 12 C -0.077 4.077 13 C -0.149 4.149 14 C -0.065 4.065 15 C -0.145 4.145 16 C -0.121 4.121 17 C -0.164 4.164 18 C 0.076 3.924 19 O -0.313 6.313 20 H 0.075 0.925 21 H 0.016 0.984 22 H 0.023 0.977 23 H 0.164 0.836 24 H 0.137 0.863 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.172 0.828 28 H 0.178 0.822 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 8.283 -12.388 -3.848 15.391 hybrid contribution -0.549 0.942 0.060 1.092 sum 7.735 -11.446 -3.788 14.325 Atomic orbital electron populations 1.70069 1.07597 1.28010 1.51273 1.25892 0.95754 1.02961 0.94551 0.85529 0.78362 0.78238 0.79124 1.19478 1.20296 1.19238 1.21284 0.92825 0.91384 1.51014 0.93302 1.17771 0.92688 0.90924 0.95462 1.21184 0.98675 0.96493 0.92991 1.23707 0.99692 0.98168 0.98195 1.19785 0.99321 0.99106 0.89520 1.21068 0.97978 0.98348 0.97466 1.19884 0.97095 0.95915 0.93575 1.21135 1.00925 1.00249 0.92201 1.21132 0.95759 0.95152 1.00048 1.21641 1.00098 0.99695 0.95011 1.17679 0.92023 0.91993 0.90715 1.84761 1.37206 1.18982 1.90371 0.92519 0.98389 0.97678 0.83606 0.86325 0.87731 0.87501 0.82789 0.82188 0.73306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.61 15 2 C 0.01 0.38 5.46 84.65 0.46 0.85 15 3 Si 0.96 45.20 29.54 68.60 2.03 47.23 15 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 7 C -0.53 -31.13 9.09 25.60 0.23 -30.90 15 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 15 9 C 0.07 3.81 5.38 29.10 0.16 3.97 15 10 C -0.09 -4.32 5.33 -18.43 -0.10 -4.42 15 11 C -0.18 -6.92 10.91 24.81 0.27 -6.65 15 12 C -0.04 -1.28 6.76 29.30 0.20 -1.08 15 13 C -0.15 -5.06 6.31 -19.53 -0.12 -5.18 15 14 C -0.06 -2.68 6.17 -20.16 -0.12 -2.80 15 15 C -0.13 -4.89 10.08 22.56 0.23 -4.66 15 16 C -0.10 -3.01 10.01 22.21 0.22 -2.78 15 17 C -0.15 -3.79 10.00 22.45 0.22 -3.56 15 18 C 0.12 3.43 6.69 22.39 0.15 3.58 15 19 O -0.50 -11.19 13.50 -92.62 -1.25 -12.44 15 20 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 21 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 15 22 H 0.00 0.29 8.13 -2.38 -0.02 0.27 15 23 H 0.15 5.21 8.06 -2.91 -0.02 5.18 15 24 H 0.12 2.86 8.14 -2.39 -0.02 2.84 15 25 H 0.10 2.94 8.14 -2.39 -0.02 2.92 15 26 H 0.11 4.45 8.06 -2.91 -0.02 4.43 15 27 H 0.15 3.44 8.06 -2.91 -0.02 3.42 15 28 H 0.16 2.99 8.06 -2.91 -0.02 2.97 15 29 H 0.41 4.76 9.06 -74.06 -0.67 4.09 15 Total: -1.00 -70.36 259.73 3.34 -67.02 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.49 Total: 8.45 kcal Atomic # 6 Polarization: -55.45 SS G_CDS: 1.80 Total: -53.65 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.28 Total: -56.61 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -1.25 Total: -12.44 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.36 3.34 -67.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260884275.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.782 kcal (2) G-P(sol) polarization free energy of solvation -70.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds