Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00324 * 2 1 4 4 H 1.48504 * 109.47124 * 270.00200 * 3 2 1 5 5 H 1.48504 * 109.46938 * 29.99841 * 3 2 1 6 6 H 1.48500 * 109.47263 * 150.00059 * 3 2 1 7 7 C 1.37888 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99786 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47107 * 179.97438 * 9 7 2 11 11 C 1.32151 * 125.87065 * 95.02072 * 10 9 7 12 12 C 1.47477 * 111.06658 * 179.97438 * 11 10 9 13 13 C 1.39763 * 131.89638 * 180.02562 * 12 11 10 14 14 C 1.37934 * 120.01820 * 179.97438 * 13 12 11 15 15 C 1.38275 * 120.43742 * 359.97438 * 14 13 12 16 16 C 1.38955 * 120.04517 * 359.97438 * 15 14 13 17 17 O 1.35906 * 120.08618 * 179.72512 * 16 15 14 18 18 C 1.38049 * 119.83617 * 0.02562 * 16 15 14 19 19 C 1.50915 * 133.21590 * 179.97438 * 18 16 15 20 20 H 0.96993 * 119.99900 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47424 * 59.99628 * 9 7 2 22 22 H 1.09004 * 109.47048 * 299.99537 * 9 7 2 23 23 H 1.07998 * 124.46888 * 359.97438 * 11 10 9 24 24 H 1.08001 * 119.98807 * 359.97438 * 13 12 11 25 25 H 1.07996 * 119.78229 * 179.97438 * 14 13 12 26 26 H 1.08002 * 119.98106 * 180.02562 * 15 14 13 27 27 H 0.96696 * 114.00029 * 90.00256 * 17 16 15 28 28 H 1.08997 * 110.23697 * 61.02805 * 19 18 16 29 29 H 1.09005 * 110.34134 * 299.04817 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2302 -3.6447 -0.0027 11 6 2.6622 -4.2951 1.0635 12 6 3.6133 -5.3575 0.6871 13 6 4.3208 -6.2902 1.4506 14 6 5.1621 -7.1919 0.8327 15 6 5.3120 -7.1816 -0.5419 16 6 4.6128 -6.2595 -1.3111 17 8 4.7639 -6.2450 -2.6617 18 6 3.7691 -5.3541 -0.6996 19 6 2.8854 -4.2484 -1.2231 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6240 -2.5575 0.8881 23 1 2.3587 -4.0774 2.0768 24 1 4.2087 -6.3049 2.5246 25 1 5.7072 -7.9107 1.4263 26 1 5.9724 -7.8912 -1.0181 27 1 4.1404 -6.8141 -3.1333 28 1 2.1297 -4.6557 -1.8947 29 1 3.4836 -3.4978 -1.7398 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260893171.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = -9.101807 kcal Electronic energy + Delta-G solvation = -13410.289172 eV Core-core repulsion = 11070.308584 eV Total energy + Delta-G solvation = -2339.980587 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.12770 -37.30962 -35.48888 -33.01488 -30.11101 -29.83445 -26.85610 -26.59206 -23.34370 -21.35084 -20.97057 -18.30868 -17.49040 -16.36991 -15.79398 -15.17106 -15.02165 -14.44712 -13.95376 -13.56401 -13.15879 -12.29937 -12.11863 -11.95848 -11.65932 -11.45753 -10.99449 -10.89307 -10.65026 -10.48615 -10.23646 -9.82351 -9.62615 -9.17403 -8.46466 -8.35023 -7.44121 -6.08850 -4.13381 1.29706 1.53178 3.02674 3.28777 3.35185 3.40183 4.08779 4.39772 4.43123 4.76674 5.14939 5.15958 5.26186 5.39932 5.64088 5.77729 5.91262 6.12768 6.16389 6.31599 6.39659 6.60384 6.64123 6.94042 7.02574 7.07237 7.37268 7.53662 7.78595 7.81257 7.86702 8.25462 8.91399 9.50920 11.00789 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.044298 B = 0.006616 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.929993 B = 4231.314462 C = 4399.363416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.059 3.941 10 C -0.039 4.039 11 C -0.195 4.195 12 C -0.025 4.025 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.165 4.165 16 C 0.123 3.877 17 O -0.499 6.499 18 C -0.140 4.140 19 C -0.059 4.059 20 H 0.263 0.737 21 H 0.033 0.967 22 H 0.035 0.965 23 H 0.125 0.875 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.385 0.615 28 H 0.094 0.906 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 -12.770 -1.016 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.023 3.977 10 C -0.039 4.039 11 C -0.213 4.213 12 C -0.025 4.025 13 C -0.145 4.145 14 C -0.125 4.125 15 C -0.183 4.183 16 C 0.078 3.922 17 O -0.309 6.309 18 C -0.140 4.140 19 C -0.095 4.095 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.143 0.857 24 H 0.138 0.862 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.240 0.760 28 H 0.112 0.888 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.878 -12.254 -0.897 14.081 hybrid contribution 0.159 0.556 -0.061 0.582 sum 7.037 -11.698 -0.958 13.685 Atomic orbital electron populations 1.69948 1.06045 1.26967 1.50263 1.25006 0.94910 0.99319 0.95022 0.86504 0.79846 0.82962 0.78237 1.20517 1.21099 1.19747 1.21017 0.93132 0.89686 1.51417 0.92359 1.18091 0.92194 0.88801 0.98649 1.23264 0.94108 0.93470 0.93032 1.21442 1.02035 0.98446 0.99340 1.19887 0.95204 0.94621 0.92790 1.20851 0.98023 0.96017 0.99602 1.20752 0.98764 0.98977 0.93981 1.21204 1.02750 1.00128 0.94266 1.17686 0.96386 0.95276 0.82803 1.84821 1.60434 1.70102 1.15503 1.20891 0.98770 0.98746 0.95636 1.19918 0.96803 0.94594 0.98163 0.92739 0.94932 0.94722 0.85707 0.86178 0.85999 0.85825 0.76036 0.88845 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.51 -14.29 9.09 -34.44 -0.31 -14.61 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 15 9 C 0.06 1.50 5.48 -29.04 -0.16 1.34 15 10 C -0.04 -0.83 5.54 -101.08 -0.56 -1.39 15 11 C -0.19 -3.90 10.63 -37.74 -0.40 -4.30 15 12 C -0.02 -0.45 6.23 -105.08 -0.65 -1.10 15 13 C -0.13 -1.93 10.10 -39.12 -0.40 -2.32 15 14 C -0.11 -1.42 10.01 -39.68 -0.40 -1.81 15 15 C -0.16 -2.27 10.00 -39.30 -0.39 -2.66 15 16 C 0.12 1.92 6.69 -39.39 -0.26 1.66 15 17 O -0.50 -6.92 13.50 -19.44 -0.26 -7.18 15 18 C -0.14 -2.49 6.31 -104.10 -0.66 -3.15 15 19 C -0.06 -1.11 6.74 -28.74 -0.19 -1.31 15 20 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 21 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.12 2.39 8.06 -52.49 -0.42 1.97 15 24 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.12 1.23 8.06 -52.49 -0.42 0.81 15 26 H 0.12 1.39 8.06 -52.49 -0.42 0.97 15 27 H 0.38 3.37 9.06 45.56 0.41 3.78 15 28 H 0.09 1.58 8.14 -51.93 -0.42 1.16 15 29 H 0.10 2.03 8.14 -51.93 -0.42 1.60 15 LS Contribution 259.84 15.07 3.92 3.92 Total: -1.00 -30.75 259.84 -7.63 -38.37 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.51 Total: 1.92 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -4.49 Total: -28.10 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.26 Total: -7.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.75 -7.63 -38.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260893171.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.270 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds