Wall clock time and date at job start Mon Mar 30 2020 02:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.30689 * 2 1 4 4 C 1.53112 * 109.43407 * 240.25827 * 2 1 3 5 5 S 1.81754 * 108.80644 * 302.91983 * 4 2 1 6 6 C 1.81747 * 102.21836 * 306.71116 * 5 4 2 7 7 C 1.53101 * 108.84052 * 53.26785 * 6 5 4 8 8 C 1.52582 * 109.95469 * 296.97085 * 7 6 5 9 9 O 1.42898 * 109.22680 * 310.39637 * 8 7 6 10 10 C 1.50696 * 109.22544 * 190.99748 * 8 7 6 11 11 H 1.07998 * 120.00405 * 244.73378 * 10 8 7 12 12 C 1.37880 * 120.00013 * 64.45577 * 10 8 7 13 13 N 1.31511 * 120.00058 * 355.28048 * 12 10 8 14 14 Si 1.86800 * 119.99903 * 175.27689 * 12 10 8 15 15 H 1.48499 * 109.46941 * 95.00220 * 14 12 10 16 16 H 1.48505 * 109.47117 * 214.99693 * 14 12 10 17 17 H 1.48497 * 109.47263 * 335.00079 * 14 12 10 18 18 H 1.08990 * 109.47606 * 300.24751 * 1 2 3 19 19 H 1.09003 * 109.46939 * 60.25279 * 1 2 3 20 20 H 1.09009 * 109.46934 * 180.24755 * 1 2 3 21 21 H 1.09001 * 109.47212 * 179.74711 * 3 2 1 22 22 H 1.08995 * 109.47167 * 299.75261 * 3 2 1 23 23 H 1.09004 * 109.47242 * 59.74814 * 3 2 1 24 24 H 1.08996 * 109.60987 * 183.11437 * 4 2 1 25 25 H 1.08999 * 109.68035 * 62.76939 * 4 2 1 26 26 H 1.08998 * 109.57583 * 293.45944 * 6 5 4 27 27 H 1.09003 * 109.68255 * 173.13562 * 6 5 4 28 28 H 1.09002 * 109.38703 * 176.82339 * 7 6 5 29 29 H 1.08996 * 109.39127 * 57.12041 * 7 6 5 30 30 H 0.96696 * 114.00099 * 300.59882 * 9 8 7 31 31 H 0.97001 * 120.00260 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0358 1.4440 0.0000 4 6 2.0394 -0.7163 -1.2537 5 16 1.3526 -2.3987 -1.2871 6 6 1.8246 -3.0394 0.3469 7 6 1.3403 -2.0611 1.4204 8 6 2.0365 -0.7141 1.2496 9 8 3.4452 -0.9240 1.1333 10 6 1.7609 0.1436 2.4576 11 1 1.1896 1.0543 2.3542 12 6 2.2331 -0.2371 3.6958 13 7 2.8432 -1.3932 3.8398 14 14 2.0062 0.8892 5.1686 15 1 0.7803 0.4957 5.9085 16 1 3.1840 0.7742 6.0658 17 1 1.8740 2.2930 4.7027 18 1 -0.3634 0.5176 0.8876 19 1 -0.3633 0.5099 -0.8923 20 1 -0.3633 -1.0277 0.0044 21 1 3.1258 1.4471 0.0045 22 1 1.6747 1.9554 -0.8921 23 1 1.6673 1.9581 0.8877 24 1 3.1279 -0.7666 -1.2293 25 1 1.7187 -0.1732 -2.1426 26 1 2.9090 -3.1350 0.4024 27 1 1.3634 -4.0141 0.5063 28 1 1.5689 -2.4642 2.4070 29 1 0.2628 -1.9258 1.3271 30 1 3.8414 -1.3663 1.8965 31 1 3.1751 -1.6612 4.7110 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900723.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:40 Heat of formation + Delta-G solvation = -62.741897 kcal Electronic energy + Delta-G solvation = -14038.945795 eV Core-core repulsion = 11832.083151 eV Total energy + Delta-G solvation = -2206.862645 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.40685 -33.90844 -32.12914 -31.21968 -27.51750 -26.39661 -25.93600 -23.27592 -21.00305 -17.85834 -16.79771 -15.90243 -15.26211 -14.39807 -13.97235 -13.69976 -13.38828 -12.88680 -12.38404 -11.95650 -11.76218 -11.43524 -11.23660 -11.15544 -10.97585 -10.86062 -10.60203 -10.33350 -10.24990 -9.95253 -9.63951 -9.17328 -8.77037 -8.55170 -8.07212 -6.90773 -6.19357 -4.29732 2.62805 3.19426 3.28069 3.31576 3.31780 4.28342 5.02384 5.50496 5.65201 5.82115 5.95575 6.04343 6.09067 6.24658 6.36010 6.41774 6.51238 6.59833 6.71447 6.87243 6.95586 7.06536 7.09357 7.20015 7.51727 7.66120 7.91021 8.14476 8.70886 9.37760 9.51587 10.82184 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040783 B = 0.012899 C = 0.011372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.392447 B = 2170.265408 C = 2461.687948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 C -0.122 4.122 4 C -0.052 4.052 5 S -0.318 6.318 6 C -0.060 4.060 7 C -0.146 4.146 8 C 0.259 3.741 9 O -0.591 6.591 10 C -0.524 4.524 11 H 0.065 0.935 12 C 0.067 3.933 13 N -0.901 5.901 14 Si 0.897 3.103 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.273 1.273 18 H 0.058 0.942 19 H 0.037 0.963 20 H 0.069 0.931 21 H 0.053 0.947 22 H 0.029 0.971 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.381 0.619 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 0.300 -4.649 5.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 C -0.181 4.181 4 C -0.200 4.200 5 S -0.091 6.091 6 C -0.208 4.208 7 C -0.185 4.185 8 C 0.219 3.781 9 O -0.401 6.401 10 C -0.562 4.562 11 H 0.083 0.917 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.198 1.198 18 H 0.077 0.923 19 H 0.056 0.944 20 H 0.088 0.912 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.232 0.768 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.496 -0.060 -5.925 6.430 hybrid contribution 0.668 0.794 2.383 2.599 sum -1.828 0.735 -3.542 4.053 Atomic orbital electron populations 1.21997 0.94618 1.02603 1.00339 1.20496 0.95199 0.95501 0.93449 1.21740 1.01189 0.95003 1.00152 1.23438 1.03236 0.92544 1.00790 1.86095 1.77950 1.18253 1.26755 1.23396 1.03924 1.00668 0.92780 1.22516 1.00005 0.96911 0.99070 1.18396 0.79182 0.89915 0.90584 1.86075 1.23536 1.83148 1.47329 1.21797 1.34019 1.08127 0.92253 0.91682 1.24991 0.94637 0.94856 0.98865 1.69526 1.40027 1.19932 1.24771 0.86503 0.77657 0.81196 0.82201 1.20748 1.21115 1.19797 0.92264 0.94359 0.91192 0.92751 0.95180 0.91451 0.89590 0.90029 0.90117 0.90201 0.87968 0.92310 0.76769 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.41 37.16 0.28 -2.36 16 2 C -0.04 -0.91 0.37 -154.67 -0.06 -0.97 16 3 C -0.12 -2.39 7.94 37.16 0.30 -2.10 16 4 C -0.05 -1.00 5.08 37.22 0.19 -0.81 16 5 S -0.32 -6.11 20.78 -107.50 -2.23 -8.34 16 6 C -0.06 -1.20 6.26 37.21 0.23 -0.97 16 7 C -0.15 -3.25 4.52 -26.89 -0.12 -3.38 16 8 C 0.26 5.97 0.15 -92.20 -0.01 5.96 16 9 O -0.59 -14.45 10.38 -35.23 -0.37 -14.82 16 10 C -0.52 -13.17 6.76 -34.44 -0.23 -13.40 16 11 H 0.07 1.64 5.64 -52.49 -0.30 1.34 16 12 C 0.07 1.70 5.17 -17.82 -0.09 1.61 16 13 N -0.90 -23.06 9.63 55.43 0.53 -22.52 16 14 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H 0.06 1.16 7.21 -51.93 -0.37 0.78 16 19 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 20 H 0.07 1.36 4.93 -51.92 -0.26 1.10 16 21 H 0.05 1.11 7.97 -51.93 -0.41 0.70 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.38 6.07 -51.93 -0.32 1.07 16 24 H 0.09 1.75 7.35 -51.93 -0.38 1.37 16 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.08 1.68 7.35 -51.93 -0.38 1.30 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.10 2.52 6.03 -51.93 -0.31 2.20 16 29 H 0.06 1.30 5.78 -51.93 -0.30 1.00 16 30 H 0.38 9.70 6.89 45.56 0.31 10.02 16 31 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 241.43 15.07 3.64 3.64 Total: -1.00 -25.06 241.43 -6.52 -31.58 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -3.55 Total: 11.72 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 0.48 Total: -16.41 kcal Atomic # 7 Polarization: -23.06 SS G_CDS: 0.53 Total: -22.52 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.37 Total: -14.82 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: -6.11 SS G_CDS: -2.23 Total: -8.34 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -25.06 -6.52 -31.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900723.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.167 kcal (2) G-P(sol) polarization free energy of solvation -25.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds