Wall clock time and date at job start Mon Mar 30 2020 02:46:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53000 * 109.30689 * 2 1
4 4 C 1.53112 * 109.43407 * 240.25827 * 2 1 3
5 5 S 1.81754 * 108.80644 * 302.91983 * 4 2 1
6 6 C 1.81747 * 102.21836 * 306.71116 * 5 4 2
7 7 C 1.53101 * 108.84052 * 53.26785 * 6 5 4
8 8 C 1.52582 * 109.95469 * 296.97085 * 7 6 5
9 9 O 1.42898 * 109.22680 * 310.39637 * 8 7 6
10 10 C 1.50696 * 109.22544 * 190.99748 * 8 7 6
11 11 H 1.07998 * 120.00405 * 244.73378 * 10 8 7
12 12 C 1.37880 * 120.00013 * 64.45577 * 10 8 7
13 13 N 1.31511 * 120.00058 * 355.28048 * 12 10 8
14 14 Si 1.86800 * 119.99903 * 175.27689 * 12 10 8
15 15 H 1.48499 * 109.46941 * 95.00220 * 14 12 10
16 16 H 1.48505 * 109.47117 * 214.99693 * 14 12 10
17 17 H 1.48497 * 109.47263 * 335.00079 * 14 12 10
18 18 H 1.08990 * 109.47606 * 300.24751 * 1 2 3
19 19 H 1.09003 * 109.46939 * 60.25279 * 1 2 3
20 20 H 1.09009 * 109.46934 * 180.24755 * 1 2 3
21 21 H 1.09001 * 109.47212 * 179.74711 * 3 2 1
22 22 H 1.08995 * 109.47167 * 299.75261 * 3 2 1
23 23 H 1.09004 * 109.47242 * 59.74814 * 3 2 1
24 24 H 1.08996 * 109.60987 * 183.11437 * 4 2 1
25 25 H 1.08999 * 109.68035 * 62.76939 * 4 2 1
26 26 H 1.08998 * 109.57583 * 293.45944 * 6 5 4
27 27 H 1.09003 * 109.68255 * 173.13562 * 6 5 4
28 28 H 1.09002 * 109.38703 * 176.82339 * 7 6 5
29 29 H 1.08996 * 109.39127 * 57.12041 * 7 6 5
30 30 H 0.96696 * 114.00099 * 300.59882 * 9 8 7
31 31 H 0.97001 * 120.00260 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0358 1.4440 0.0000
4 6 2.0394 -0.7163 -1.2537
5 16 1.3526 -2.3987 -1.2871
6 6 1.8246 -3.0394 0.3469
7 6 1.3403 -2.0611 1.4204
8 6 2.0365 -0.7141 1.2496
9 8 3.4452 -0.9240 1.1333
10 6 1.7609 0.1436 2.4576
11 1 1.1896 1.0543 2.3542
12 6 2.2331 -0.2371 3.6958
13 7 2.8432 -1.3932 3.8398
14 14 2.0062 0.8892 5.1686
15 1 0.7803 0.4957 5.9085
16 1 3.1840 0.7742 6.0658
17 1 1.8740 2.2930 4.7027
18 1 -0.3634 0.5176 0.8876
19 1 -0.3633 0.5099 -0.8923
20 1 -0.3633 -1.0277 0.0044
21 1 3.1258 1.4471 0.0045
22 1 1.6747 1.9554 -0.8921
23 1 1.6673 1.9581 0.8877
24 1 3.1279 -0.7666 -1.2293
25 1 1.7187 -0.1732 -2.1426
26 1 2.9090 -3.1350 0.4024
27 1 1.3634 -4.0141 0.5063
28 1 1.5689 -2.4642 2.4070
29 1 0.2628 -1.9258 1.3271
30 1 3.8414 -1.3663 1.8965
31 1 3.1751 -1.6612 4.7110
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260900723.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:40
Heat of formation + Delta-G solvation = -62.741897 kcal
Electronic energy + Delta-G solvation = -14038.945795 eV
Core-core repulsion = 11832.083151 eV
Total energy + Delta-G solvation = -2206.862645 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 216.093 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-38.40685 -33.90844 -32.12914 -31.21968 -27.51750 -26.39661 -25.93600 -23.27592
-21.00305 -17.85834 -16.79771 -15.90243 -15.26211 -14.39807 -13.97235 -13.69976
-13.38828 -12.88680 -12.38404 -11.95650 -11.76218 -11.43524 -11.23660 -11.15544
-10.97585 -10.86062 -10.60203 -10.33350 -10.24990 -9.95253 -9.63951 -9.17328
-8.77037 -8.55170 -8.07212 -6.90773 -6.19357 -4.29732 2.62805 3.19426
3.28069 3.31576 3.31780 4.28342 5.02384 5.50496 5.65201 5.82115
5.95575 6.04343 6.09067 6.24658 6.36010 6.41774 6.51238 6.59833
6.71447 6.87243 6.95586 7.06536 7.09357 7.20015 7.51727 7.66120
7.91021 8.14476 8.70886 9.37760 9.51587 10.82184
Molecular weight = 216.09amu
Principal moments of inertia in cm(-1)
A = 0.040783 B = 0.012899 C = 0.011372
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 686.392447 B = 2170.265408 C = 2461.687948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.045 4.045
3 C -0.122 4.122
4 C -0.052 4.052
5 S -0.318 6.318
6 C -0.060 4.060
7 C -0.146 4.146
8 C 0.259 3.741
9 O -0.591 6.591
10 C -0.524 4.524
11 H 0.065 0.935
12 C 0.067 3.933
13 N -0.901 5.901
14 Si 0.897 3.103
15 H -0.281 1.281
16 H -0.285 1.285
17 H -0.273 1.273
18 H 0.058 0.942
19 H 0.037 0.963
20 H 0.069 0.931
21 H 0.053 0.947
22 H 0.029 0.971
23 H 0.067 0.933
24 H 0.085 0.915
25 H 0.081 0.919
26 H 0.080 0.920
27 H 0.080 0.920
28 H 0.102 0.898
29 H 0.058 0.942
30 H 0.381 0.619
31 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.929 0.300 -4.649 5.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.046 4.046
3 C -0.181 4.181
4 C -0.200 4.200
5 S -0.091 6.091
6 C -0.208 4.208
7 C -0.185 4.185
8 C 0.219 3.781
9 O -0.401 6.401
10 C -0.562 4.562
11 H 0.083 0.917
12 C -0.133 4.133
13 N -0.543 5.543
14 Si 0.724 3.276
15 H -0.207 1.207
16 H -0.211 1.211
17 H -0.198 1.198
18 H 0.077 0.923
19 H 0.056 0.944
20 H 0.088 0.912
21 H 0.072 0.928
22 H 0.048 0.952
23 H 0.085 0.915
24 H 0.104 0.896
25 H 0.100 0.900
26 H 0.099 0.901
27 H 0.098 0.902
28 H 0.120 0.880
29 H 0.077 0.923
30 H 0.232 0.768
31 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -2.496 -0.060 -5.925 6.430
hybrid contribution 0.668 0.794 2.383 2.599
sum -1.828 0.735 -3.542 4.053
Atomic orbital electron populations
1.21997 0.94618 1.02603 1.00339 1.20496 0.95199 0.95501 0.93449
1.21740 1.01189 0.95003 1.00152 1.23438 1.03236 0.92544 1.00790
1.86095 1.77950 1.18253 1.26755 1.23396 1.03924 1.00668 0.92780
1.22516 1.00005 0.96911 0.99070 1.18396 0.79182 0.89915 0.90584
1.86075 1.23536 1.83148 1.47329 1.21797 1.34019 1.08127 0.92253
0.91682 1.24991 0.94637 0.94856 0.98865 1.69526 1.40027 1.19932
1.24771 0.86503 0.77657 0.81196 0.82201 1.20748 1.21115 1.19797
0.92264 0.94359 0.91192 0.92751 0.95180 0.91451 0.89590 0.90029
0.90117 0.90201 0.87968 0.92310 0.76769 0.92338
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.63 7.41 37.16 0.28 -2.36 16
2 C -0.04 -0.91 0.37 -154.67 -0.06 -0.97 16
3 C -0.12 -2.39 7.94 37.16 0.30 -2.10 16
4 C -0.05 -1.00 5.08 37.22 0.19 -0.81 16
5 S -0.32 -6.11 20.78 -107.50 -2.23 -8.34 16
6 C -0.06 -1.20 6.26 37.21 0.23 -0.97 16
7 C -0.15 -3.25 4.52 -26.89 -0.12 -3.38 16
8 C 0.26 5.97 0.15 -92.20 -0.01 5.96 16
9 O -0.59 -14.45 10.38 -35.23 -0.37 -14.82 16
10 C -0.52 -13.17 6.76 -34.44 -0.23 -13.40 16
11 H 0.07 1.64 5.64 -52.49 -0.30 1.34 16
12 C 0.07 1.70 5.17 -17.82 -0.09 1.61 16
13 N -0.90 -23.06 9.63 55.43 0.53 -22.52 16
14 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16
15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
16 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16
17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
18 H 0.06 1.16 7.21 -51.93 -0.37 0.78 16
19 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16
20 H 0.07 1.36 4.93 -51.92 -0.26 1.10 16
21 H 0.05 1.11 7.97 -51.93 -0.41 0.70 16
22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
23 H 0.07 1.38 6.07 -51.93 -0.32 1.07 16
24 H 0.09 1.75 7.35 -51.93 -0.38 1.37 16
25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
26 H 0.08 1.68 7.35 -51.93 -0.38 1.30 16
27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16
28 H 0.10 2.52 6.03 -51.93 -0.31 2.20 16
29 H 0.06 1.30 5.78 -51.93 -0.30 1.00 16
30 H 0.38 9.70 6.89 45.56 0.31 10.02 16
31 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16
LS Contribution 241.43 15.07 3.64 3.64
Total: -1.00 -25.06 241.43 -6.52 -31.58
By element:
Atomic # 1 Polarization: 15.27 SS G_CDS: -3.55 Total: 11.72 kcal
Atomic # 6 Polarization: -16.89 SS G_CDS: 0.48 Total: -16.41 kcal
Atomic # 7 Polarization: -23.06 SS G_CDS: 0.53 Total: -22.52 kcal
Atomic # 8 Polarization: -14.45 SS G_CDS: -0.37 Total: -14.82 kcal
Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal
Atomic # 16 Polarization: -6.11 SS G_CDS: -2.23 Total: -8.34 kcal
Total LS contribution 3.64 Total: 3.64 kcal
Total: -25.06 -6.52 -31.58 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260900723.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.167 kcal
(2) G-P(sol) polarization free energy of solvation -25.056 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.575 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.742 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds