Wall clock time and date at job start Mon Mar 30 2020 02:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.30689 * 2 1 4 4 C 1.53112 * 109.43407 * 240.25827 * 2 1 3 5 5 S 1.81754 * 108.80644 * 302.91983 * 4 2 1 6 6 C 1.81747 * 102.21836 * 306.71116 * 5 4 2 7 7 C 1.53101 * 108.84052 * 53.26785 * 6 5 4 8 8 C 1.52582 * 109.95469 * 296.97085 * 7 6 5 9 9 O 1.42898 * 109.22680 * 310.39637 * 8 7 6 10 10 C 1.50696 * 109.22544 * 190.99748 * 8 7 6 11 11 H 1.07998 * 120.00405 * 244.73378 * 10 8 7 12 12 C 1.37880 * 120.00013 * 64.45577 * 10 8 7 13 13 N 1.31511 * 120.00058 * 355.28048 * 12 10 8 14 14 Si 1.86800 * 119.99903 * 175.27689 * 12 10 8 15 15 H 1.48499 * 109.46941 * 95.00220 * 14 12 10 16 16 H 1.48505 * 109.47117 * 214.99693 * 14 12 10 17 17 H 1.48497 * 109.47263 * 335.00079 * 14 12 10 18 18 H 1.08990 * 109.47606 * 300.24751 * 1 2 3 19 19 H 1.09003 * 109.46939 * 60.25279 * 1 2 3 20 20 H 1.09009 * 109.46934 * 180.24755 * 1 2 3 21 21 H 1.09001 * 109.47212 * 179.74711 * 3 2 1 22 22 H 1.08995 * 109.47167 * 299.75261 * 3 2 1 23 23 H 1.09004 * 109.47242 * 59.74814 * 3 2 1 24 24 H 1.08996 * 109.60987 * 183.11437 * 4 2 1 25 25 H 1.08999 * 109.68035 * 62.76939 * 4 2 1 26 26 H 1.08998 * 109.57583 * 293.45944 * 6 5 4 27 27 H 1.09003 * 109.68255 * 173.13562 * 6 5 4 28 28 H 1.09002 * 109.38703 * 176.82339 * 7 6 5 29 29 H 1.08996 * 109.39127 * 57.12041 * 7 6 5 30 30 H 0.96696 * 114.00099 * 300.59882 * 9 8 7 31 31 H 0.97001 * 120.00260 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0358 1.4440 0.0000 4 6 2.0394 -0.7163 -1.2537 5 16 1.3526 -2.3987 -1.2871 6 6 1.8246 -3.0394 0.3469 7 6 1.3403 -2.0611 1.4204 8 6 2.0365 -0.7141 1.2496 9 8 3.4452 -0.9240 1.1333 10 6 1.7609 0.1436 2.4576 11 1 1.1896 1.0543 2.3542 12 6 2.2331 -0.2371 3.6958 13 7 2.8432 -1.3932 3.8398 14 14 2.0062 0.8892 5.1686 15 1 0.7803 0.4957 5.9085 16 1 3.1840 0.7742 6.0658 17 1 1.8740 2.2930 4.7027 18 1 -0.3634 0.5176 0.8876 19 1 -0.3633 0.5099 -0.8923 20 1 -0.3633 -1.0277 0.0044 21 1 3.1258 1.4471 0.0045 22 1 1.6747 1.9554 -0.8921 23 1 1.6673 1.9581 0.8877 24 1 3.1279 -0.7666 -1.2293 25 1 1.7187 -0.1732 -2.1426 26 1 2.9090 -3.1350 0.4024 27 1 1.3634 -4.0141 0.5063 28 1 1.5689 -2.4642 2.4070 29 1 0.2628 -1.9258 1.3271 30 1 3.8414 -1.3663 1.8965 31 1 3.1751 -1.6612 4.7110 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260900723.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:39 Heat of formation + Delta-G solvation = -77.177958 kcal Electronic energy + Delta-G solvation = -14039.571790 eV Core-core repulsion = 11832.083151 eV Total energy + Delta-G solvation = -2207.488639 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.13737 -35.66630 -34.06779 -32.94674 -29.25313 -27.94913 -27.60050 -25.08747 -22.71512 -19.59267 -18.65018 -17.53518 -17.10047 -16.17976 -15.67490 -15.44179 -15.03877 -14.47356 -14.04568 -13.71903 -13.51832 -13.06833 -12.91319 -12.83224 -12.66142 -12.53851 -12.35676 -12.10035 -11.88056 -11.66240 -11.39276 -10.89328 -10.52489 -10.37822 -9.92387 -8.46929 -8.09315 -6.26867 1.07252 1.39335 1.44102 1.51646 1.73640 2.41141 3.08582 3.88195 4.07520 4.15556 4.35586 4.37531 4.53355 4.65259 4.70395 4.81936 4.96661 4.99970 5.13311 5.24031 5.32223 5.35882 5.48643 5.53851 5.67493 5.88642 6.05515 6.26372 6.76763 7.42426 7.54268 8.87984 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040783 B = 0.012899 C = 0.011372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.392447 B = 2170.265408 C = 2461.687948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C -0.117 4.117 4 C -0.052 4.052 5 S -0.295 6.295 6 C -0.060 4.060 7 C -0.139 4.139 8 C 0.251 3.749 9 O -0.596 6.596 10 C -0.537 4.537 11 H 0.060 0.940 12 C 0.027 3.973 13 N -0.915 5.915 14 Si 0.948 3.052 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 H 0.048 0.952 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.038 0.962 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.373 0.627 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 0.751 -5.646 6.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.050 4.050 3 C -0.176 4.176 4 C -0.200 4.200 5 S -0.067 6.067 6 C -0.208 4.208 7 C -0.178 4.178 8 C 0.211 3.789 9 O -0.405 6.405 10 C -0.575 4.575 11 H 0.079 0.921 12 C -0.172 4.172 13 N -0.557 5.557 14 Si 0.775 3.225 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 H 0.067 0.933 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.057 0.943 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.127 0.873 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.223 0.777 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.237 0.394 -6.933 7.661 hybrid contribution 0.895 0.656 2.672 2.894 sum -2.342 1.049 -4.260 4.974 Atomic orbital electron populations 1.21931 0.93385 1.02516 1.01124 1.20528 0.96136 0.95709 0.92663 1.21670 1.00140 0.94728 1.01028 1.23435 1.02432 0.92898 1.01234 1.86006 1.77576 1.18008 1.25151 1.23298 1.03278 1.01091 0.93145 1.22339 0.99862 0.97089 0.98510 1.18587 0.78487 0.90287 0.91519 1.86081 1.24562 1.83055 1.46797 1.22051 1.33910 1.08266 0.93280 0.92144 1.25583 0.94810 0.95911 1.00898 1.69620 1.40397 1.20680 1.25008 0.85696 0.77347 0.79696 0.79731 1.20590 1.21246 1.19798 0.93320 0.91739 0.91668 0.94283 0.92000 0.92865 0.90970 0.87342 0.91287 0.88463 0.90632 0.92301 0.77720 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.41 71.98 0.53 -4.20 16 2 C -0.05 -1.90 0.37 -52.28 -0.02 -1.92 16 3 C -0.12 -4.38 7.94 71.98 0.57 -3.81 16 4 C -0.05 -1.87 5.08 72.02 0.37 -1.51 16 5 S -0.29 -10.64 20.78 -56.49 -1.17 -11.81 16 6 C -0.06 -2.35 6.26 72.02 0.45 -1.90 16 7 C -0.14 -6.15 4.52 30.49 0.14 -6.01 16 8 C 0.25 11.47 0.15 -11.82 0.00 11.47 16 9 O -0.60 -29.30 10.38 -148.98 -1.55 -30.85 16 10 C -0.54 -26.96 6.76 25.60 0.17 -26.78 16 11 H 0.06 3.03 5.64 -2.91 -0.02 3.02 16 12 C 0.03 1.36 5.17 84.66 0.44 1.79 16 13 N -0.92 -47.30 9.63 21.45 0.21 -47.09 16 14 Si 0.95 41.42 29.54 68.60 2.03 43.44 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 H 0.05 1.82 7.21 -2.39 -0.02 1.81 16 19 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 20 H 0.06 2.39 4.93 -2.38 -0.01 2.37 16 21 H 0.04 1.55 7.97 -2.39 -0.02 1.53 16 22 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.05 2.12 6.07 -2.38 -0.01 2.11 16 24 H 0.07 2.82 7.35 -2.39 -0.02 2.80 16 25 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 26 H 0.07 2.85 7.35 -2.39 -0.02 2.84 16 27 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 28 H 0.08 3.76 6.03 -2.39 -0.01 3.75 16 29 H 0.06 2.57 5.78 -2.39 -0.01 2.55 16 30 H 0.37 19.36 6.89 -74.06 -0.51 18.85 16 31 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 Total: -1.00 -51.58 241.43 2.78 -48.80 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.62 Total: 30.37 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 2.65 Total: -32.87 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.21 Total: -47.09 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.55 Total: -30.85 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.17 Total: -11.81 kcal Total: -51.58 2.78 -48.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900723.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.375 kcal (2) G-P(sol) polarization free energy of solvation -51.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds