Wall clock time and date at job start Mon Mar 30 2020 02:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.31023 * 2 1 4 4 C 1.53098 * 109.38751 * 119.75307 * 2 1 3 5 5 S 1.81749 * 108.84239 * 57.12702 * 4 2 1 6 6 C 1.81742 * 102.22126 * 53.26355 * 5 4 2 7 7 C 1.53100 * 108.84316 * 306.73382 * 6 5 4 8 8 C 1.52582 * 109.39340 * 240.24736 * 2 1 3 9 9 O 1.42896 * 109.22770 * 190.20844 * 8 2 1 10 10 C 1.50701 * 109.22535 * 70.84438 * 8 2 1 11 11 H 1.08002 * 119.99792 * 353.49383 * 10 8 2 12 12 C 1.37869 * 119.99963 * 173.48441 * 10 8 2 13 13 N 1.31514 * 120.00356 * 5.12087 * 12 10 8 14 14 Si 1.86802 * 120.00090 * 185.11850 * 12 10 8 15 15 H 1.48501 * 109.47077 * 84.99914 * 14 12 10 16 16 H 1.48500 * 109.47407 * 205.00439 * 14 12 10 17 17 H 1.48504 * 109.46976 * 325.00425 * 14 12 10 18 18 H 1.09003 * 109.47323 * 300.24475 * 1 2 3 19 19 H 1.08995 * 109.46961 * 60.24483 * 1 2 3 20 20 H 1.08998 * 109.47419 * 180.25089 * 1 2 3 21 21 H 1.09001 * 109.47325 * 179.74792 * 3 2 1 22 22 H 1.08993 * 109.47159 * 299.75238 * 3 2 1 23 23 H 1.09001 * 109.47113 * 59.75412 * 3 2 1 24 24 H 1.08997 * 109.57996 * 297.31076 * 4 2 1 25 25 H 1.09004 * 109.57675 * 176.93199 * 4 2 1 26 26 H 1.09005 * 109.57298 * 186.93346 * 6 5 4 27 27 H 1.08999 * 109.68334 * 66.60800 * 6 5 4 28 28 H 1.08996 * 109.39422 * 183.17203 * 7 6 5 29 29 H 1.09001 * 109.39178 * 302.88074 * 7 6 5 30 30 H 0.96706 * 113.99795 * 186.11589 * 9 8 2 31 31 H 0.96999 * 120.00293 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0359 1.4439 0.0000 4 6 2.0382 -0.7167 1.2538 5 16 1.3523 -2.3995 1.2866 6 6 1.8254 -3.0397 -0.3472 7 6 1.3411 -2.0616 -1.4208 8 6 2.0366 -0.7142 -1.2495 9 8 3.4454 -0.9233 -1.1334 10 6 1.7609 0.1435 -2.4576 11 1 1.1816 1.0493 -2.3558 12 6 2.2484 -0.2280 -3.6925 13 7 2.8669 -1.3797 -3.8361 14 14 2.0304 0.9045 -5.1620 15 1 3.1306 1.9016 -5.1860 16 1 2.0602 0.1042 -6.4126 17 1 0.7270 1.6081 -5.0556 18 1 -0.3634 0.5176 0.8878 19 1 -0.3633 0.5100 -0.8921 20 1 -0.3634 -1.0276 0.0045 21 1 3.1259 1.4470 0.0045 22 1 1.6748 1.9554 -0.8921 23 1 1.6675 1.9580 0.8878 24 1 1.7150 -0.1731 2.1415 25 1 3.1268 -0.7664 1.2301 26 1 1.3630 -4.0140 -0.5055 27 1 2.9096 -3.1365 -0.4037 28 1 1.5704 -2.4643 -2.4073 29 1 0.2634 -1.9269 -1.3280 30 1 3.8558 -1.2883 -1.9294 31 1 3.2095 -1.6413 -4.7051 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900724.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:41 Heat of formation + Delta-G solvation = -63.125850 kcal Electronic energy + Delta-G solvation = -14038.613564 eV Core-core repulsion = 11831.734270 eV Total energy + Delta-G solvation = -2206.879294 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.40034 -33.91564 -32.11085 -31.23251 -27.51714 -26.39524 -25.93455 -23.27972 -20.99306 -17.85753 -16.82232 -15.89504 -15.25938 -14.35348 -13.96833 -13.70460 -13.39131 -12.88646 -12.38988 -11.97133 -11.75750 -11.42586 -11.24300 -11.13770 -10.98366 -10.87261 -10.59884 -10.34210 -10.23520 -9.94798 -9.64695 -9.19614 -8.74894 -8.56137 -8.07178 -6.90167 -6.20435 -4.31447 2.63778 3.20049 3.27397 3.29770 3.32518 4.27383 5.01140 5.50696 5.65504 5.83191 5.96461 6.05261 6.09457 6.25024 6.36185 6.42780 6.51904 6.60087 6.71483 6.87794 6.95834 7.07216 7.10076 7.19879 7.51633 7.67546 7.90345 8.12173 8.69527 9.36691 9.53163 10.80804 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040839 B = 0.012890 C = 0.011367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.454164 B = 2171.650574 C = 2462.708689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 C -0.122 4.122 4 C -0.052 4.052 5 S -0.318 6.318 6 C -0.059 4.059 7 C -0.143 4.143 8 C 0.259 3.741 9 O -0.592 6.592 10 C -0.525 4.525 11 H 0.065 0.935 12 C 0.066 3.934 13 N -0.901 5.901 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.274 1.274 18 H 0.037 0.963 19 H 0.058 0.942 20 H 0.069 0.931 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.383 0.617 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 0.411 4.571 4.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 C -0.181 4.181 4 C -0.200 4.200 5 S -0.091 6.091 6 C -0.207 4.207 7 C -0.183 4.183 8 C 0.219 3.781 9 O -0.403 6.403 10 C -0.563 4.563 11 H 0.083 0.917 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.199 1.199 18 H 0.056 0.944 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.048 0.952 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.235 0.765 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.503 -0.011 5.865 6.377 hybrid contribution 0.696 0.865 -2.393 2.638 sum -1.807 0.854 3.472 4.006 Atomic orbital electron populations 1.21998 0.94632 1.02594 1.00361 1.20496 0.95199 0.95478 0.93497 1.21741 1.01138 0.95011 1.00211 1.23431 1.03232 0.92550 1.00786 1.86089 1.77921 1.18216 1.26844 1.23387 1.03985 1.00600 0.92727 1.22481 0.99883 0.96920 0.98970 1.18387 0.79252 0.89874 0.90588 1.86058 1.23145 1.87484 1.43609 1.21798 1.33544 1.08547 0.92442 0.91654 1.25000 0.94712 0.94858 0.98839 1.69510 1.39550 1.20154 1.25055 0.86525 0.78690 0.80706 0.81605 1.20487 1.21226 1.19914 0.94366 0.92258 0.91187 0.92777 0.91439 0.95161 0.90040 0.89591 0.90265 0.90039 0.88130 0.92365 0.76541 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.41 37.15 0.28 -2.37 16 2 C -0.05 -0.92 0.37 -154.68 -0.06 -0.98 16 3 C -0.12 -2.39 7.95 37.16 0.30 -2.09 16 4 C -0.05 -1.00 5.07 37.21 0.19 -0.81 16 5 S -0.32 -6.13 20.77 -107.50 -2.23 -8.37 16 6 C -0.06 -1.19 6.26 37.21 0.23 -0.96 16 7 C -0.14 -3.21 4.56 -26.89 -0.12 -3.33 16 8 C 0.26 5.98 0.15 -92.20 -0.01 5.96 16 9 O -0.59 -14.53 10.42 -35.23 -0.37 -14.89 16 10 C -0.53 -13.17 6.73 -34.44 -0.23 -13.40 16 11 H 0.07 1.64 5.65 -52.49 -0.30 1.34 16 12 C 0.07 1.68 5.14 -17.82 -0.09 1.59 16 13 N -0.90 -23.03 9.62 55.43 0.53 -22.50 16 14 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 18 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 19 H 0.06 1.16 7.19 -51.93 -0.37 0.79 16 20 H 0.07 1.36 4.95 -51.93 -0.26 1.11 16 21 H 0.05 1.10 7.98 -51.93 -0.41 0.69 16 22 H 0.07 1.38 6.06 -51.93 -0.31 1.06 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.09 1.76 7.36 -51.93 -0.38 1.38 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.72 7.36 -51.93 -0.38 1.34 16 28 H 0.10 2.49 6.09 -51.93 -0.32 2.17 16 29 H 0.06 1.29 5.80 -51.93 -0.30 0.99 16 30 H 0.38 9.81 6.74 45.56 0.31 10.12 16 31 H 0.27 6.61 8.31 -40.82 -0.34 6.28 16 LS Contribution 241.37 15.07 3.64 3.64 Total: -1.00 -24.99 241.37 -6.53 -31.52 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -3.56 Total: 11.90 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 0.48 Total: -16.40 kcal Atomic # 7 Polarization: -23.03 SS G_CDS: 0.53 Total: -22.50 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.37 Total: -14.89 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: -6.13 SS G_CDS: -2.23 Total: -8.37 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -24.99 -6.53 -31.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900724.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.605 kcal (2) G-P(sol) polarization free energy of solvation -24.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds