Wall clock time and date at job start Mon Mar 30 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.38713 * 2 1 4 4 C 1.53097 * 109.39348 * 119.80770 * 2 1 3 5 5 S 1.81753 * 108.83883 * 183.07651 * 4 2 1 6 6 C 1.81743 * 102.22075 * 306.73108 * 5 4 2 7 7 C 1.53101 * 108.84189 * 53.26808 * 6 5 4 8 8 H 1.09001 * 109.38790 * 57.12347 * 7 6 5 9 9 C 1.53001 * 109.39235 * 176.82240 * 7 6 5 10 10 C 1.52581 * 109.95592 * 296.97499 * 7 6 5 11 11 O 1.42901 * 109.22496 * 310.35145 * 10 7 6 12 12 C 1.50705 * 109.22550 * 190.99399 * 10 7 6 13 13 H 1.07992 * 120.00021 * 118.17919 * 12 10 7 14 14 C 1.37877 * 119.99889 * 298.17857 * 12 10 7 15 15 N 1.31521 * 120.00005 * 3.26652 * 14 12 10 16 16 Si 1.86794 * 119.99897 * 183.26451 * 14 12 10 17 17 H 1.48498 * 109.47210 * 90.00074 * 16 14 12 18 18 H 1.48500 * 109.47588 * 209.99885 * 16 14 12 19 19 H 1.48497 * 109.47244 * 330.00423 * 16 14 12 20 20 H 1.08992 * 109.46936 * 294.36235 * 1 2 3 21 21 H 1.08995 * 109.47210 * 54.37006 * 1 2 3 22 22 H 1.09000 * 109.46612 * 174.36709 * 1 2 3 23 23 H 1.09000 * 109.57227 * 63.26754 * 4 2 1 24 24 H 1.08994 * 109.67905 * 302.94634 * 4 2 1 25 25 H 1.09002 * 109.57953 * 293.46222 * 6 5 4 26 26 H 1.09005 * 109.68439 * 173.13604 * 6 5 4 27 27 H 1.08997 * 109.46785 * 60.00115 * 9 7 6 28 28 H 1.09004 * 109.47157 * 179.97438 * 9 7 6 29 29 H 1.08995 * 109.47536 * 300.00129 * 9 7 6 30 30 H 0.96698 * 113.99912 * 180.02562 * 11 10 7 31 31 H 0.96999 * 119.99659 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0384 -0.7178 1.2530 5 16 3.8535 -0.6294 1.2844 6 6 4.2990 -1.2876 -0.3500 7 6 3.5362 -0.5056 -1.4227 8 1 3.7670 0.5556 -1.3297 9 6 3.9615 -0.9963 -2.8080 10 6 2.0346 -0.7145 -1.2503 11 8 1.7642 -2.1129 -1.1346 12 6 1.3159 -0.1693 -2.4575 13 1 0.7315 -0.8290 -3.0817 14 6 1.4044 1.1718 -2.7651 15 7 2.1673 1.9632 -2.0430 16 14 0.4409 1.8648 -4.2076 17 1 -0.8949 2.3146 -3.7402 18 1 1.1766 3.0175 -4.7865 19 1 0.2747 0.8132 -5.2428 20 1 -0.3633 0.4239 0.9361 21 1 -0.3633 0.5986 -0.8352 22 1 -0.3632 -1.0227 -0.1009 23 1 1.7239 -1.7612 1.2291 24 1 1.6338 -0.2348 2.1424 25 1 4.0286 -2.3421 -0.4053 26 1 5.3714 -1.1767 -0.5107 27 1 3.7359 -2.0585 -2.9023 28 1 3.4188 -0.4407 -3.5728 29 1 5.0326 -0.8397 -2.9360 30 1 0.8273 -2.3244 -1.0223 31 1 2.2298 2.9066 -2.2596 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260920524.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:12 Heat of formation + Delta-G solvation = -66.997694 kcal Electronic energy + Delta-G solvation = -14060.852523 eV Core-core repulsion = 11853.805333 eV Total energy + Delta-G solvation = -2207.047190 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.23655 -33.22299 -32.71218 -32.00467 -27.32269 -25.99470 -25.81054 -23.33213 -19.64156 -18.86231 -16.95192 -15.75193 -15.19699 -14.76530 -13.76477 -13.72684 -13.27067 -12.73431 -12.17510 -11.85375 -11.73487 -11.57518 -11.29017 -11.18055 -10.98719 -10.92780 -10.43741 -10.19958 -10.05997 -9.80658 -9.56395 -9.12953 -8.84905 -8.43327 -8.23983 -6.84951 -6.12176 -4.19545 2.70991 3.20396 3.29533 3.32041 3.39750 4.30480 5.12509 5.61518 5.77542 5.89618 5.95920 6.05170 6.21384 6.33313 6.45587 6.46361 6.55453 6.69193 6.73159 6.87674 7.21713 7.26584 7.38831 7.55974 7.63421 7.70562 8.00278 8.15808 8.59931 9.06548 9.47109 10.89232 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.035972 B = 0.013886 C = 0.012485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.195391 B = 2015.926641 C = 2242.184833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 H 0.110 0.890 4 C -0.061 4.061 5 S -0.314 6.314 6 C -0.061 4.061 7 C -0.067 4.067 8 H 0.112 0.888 9 C -0.117 4.117 10 C 0.257 3.743 11 O -0.583 6.583 12 C -0.531 4.531 13 H 0.061 0.939 14 C 0.072 3.928 15 N -0.879 5.879 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.027 0.973 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.356 0.644 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -3.113 2.495 4.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.132 4.132 3 H 0.128 0.872 4 C -0.209 4.209 5 S -0.085 6.085 6 C -0.209 4.209 7 C -0.087 4.087 8 H 0.130 0.870 9 C -0.176 4.176 10 C 0.218 3.782 11 O -0.389 6.389 12 C -0.569 4.569 13 H 0.079 0.921 14 C -0.131 4.131 15 N -0.517 5.517 16 Si 0.715 3.285 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.200 1.200 20 H 0.046 0.954 21 H 0.088 0.912 22 H 0.052 0.948 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.201 0.799 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.047 -2.584 3.303 4.323 hybrid contribution -1.902 0.131 -1.621 2.502 sum -0.855 -2.453 1.682 3.095 Atomic orbital electron populations 1.21611 0.96116 1.00070 1.00121 1.21973 0.95277 1.03190 0.92773 0.87190 1.23460 0.91683 1.03563 1.02182 1.86123 1.10005 1.86879 1.25514 1.23505 1.01793 1.02456 0.93192 1.21317 0.94144 1.01250 0.91994 0.87042 1.21586 0.97532 1.00279 0.98244 1.18727 0.91611 0.76249 0.91623 1.86329 1.28709 1.27581 1.96246 1.21526 1.30931 0.93663 1.10796 0.92110 1.24832 0.95019 0.96943 0.96319 1.69830 1.37416 1.05338 1.39082 0.86664 0.80153 0.78797 0.82893 1.20643 1.21162 1.19951 0.95402 0.91204 0.94763 0.90839 0.90206 0.90368 0.90242 0.94230 0.91193 0.95858 0.79875 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.55 37.16 0.32 -2.06 16 2 C -0.11 -2.41 1.67 -90.78 -0.15 -2.57 16 3 H 0.11 2.73 6.39 -51.93 -0.33 2.39 16 4 C -0.06 -1.19 5.54 37.21 0.21 -0.99 16 5 S -0.31 -6.40 22.33 -107.50 -2.40 -8.80 16 6 C -0.06 -1.26 5.54 37.21 0.21 -1.05 16 7 C -0.07 -1.51 1.68 -90.78 -0.15 -1.67 16 8 H 0.11 2.82 6.34 -51.93 -0.33 2.49 16 9 C -0.12 -2.54 8.69 37.16 0.32 -2.22 16 10 C 0.26 5.81 0.15 -92.20 -0.01 5.80 16 11 O -0.58 -12.54 10.42 -35.23 -0.37 -12.91 16 12 C -0.53 -13.00 5.07 -34.44 -0.17 -13.17 16 13 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 14 C 0.07 1.78 4.33 -17.82 -0.08 1.70 16 15 N -0.88 -22.45 9.69 55.43 0.54 -21.91 16 16 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.07 1.52 6.77 -51.93 -0.35 1.17 16 22 H 0.03 0.61 6.81 -51.93 -0.35 0.25 16 23 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 24 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 25 H 0.08 1.62 7.36 -51.93 -0.38 1.24 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.04 0.83 7.98 -51.93 -0.41 0.42 16 28 H 0.07 1.64 6.63 -51.93 -0.34 1.29 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.36 6.77 7.60 45.56 0.35 7.12 16 31 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 246.44 15.07 3.71 3.71 Total: -1.00 -25.23 246.44 -6.83 -32.06 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.78 Total: 9.22 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 0.48 Total: -16.22 kcal Atomic # 7 Polarization: -22.45 SS G_CDS: 0.54 Total: -21.91 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.37 Total: -12.91 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: -6.40 SS G_CDS: -2.40 Total: -8.80 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -25.23 -6.83 -32.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260920524.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.937 kcal (2) G-P(sol) polarization free energy of solvation -25.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds