Wall clock time and date at job start Mon Mar 30 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99872 * 2 1 4 4 H 1.48507 * 109.47082 * 239.99966 * 3 2 1 5 5 H 1.48500 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47018 * 120.00103 * 3 2 1 7 7 C 1.37876 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.50708 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.32142 * 124.46640 * 94.97363 * 10 9 7 12 12 C 1.51079 * 108.27926 * 180.23224 * 11 10 9 13 13 C 1.50954 * 105.46599 * 359.64112 * 12 11 10 14 14 C 1.37600 * 133.12943 * 180.09291 * 13 12 11 15 15 C 1.38365 * 120.02412 * 180.34827 * 14 13 12 16 16 C 1.38857 * 120.05649 * 359.96113 * 15 14 13 17 17 O 1.35904 * 119.87621 * 180.02562 * 16 15 14 18 18 C 1.38412 * 120.24469 * 359.97438 * 16 15 14 19 19 C 1.39637 * 119.85861 * 0.02562 * 18 16 15 20 20 H 0.97002 * 119.99574 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47370 * 60.00476 * 9 7 2 22 22 H 1.09004 * 109.47470 * 299.99866 * 9 7 2 23 23 H 1.08002 * 125.85740 * 359.96151 * 11 10 9 24 24 H 1.09004 * 110.24970 * 118.77049 * 12 11 10 25 25 H 1.09003 * 110.24538 * 240.77359 * 12 11 10 26 26 H 1.07998 * 119.99032 * 0.33361 * 14 13 12 27 27 H 1.07997 * 119.97299 * 179.97438 * 15 14 13 28 28 H 0.96692 * 114.00491 * 269.97417 * 17 16 15 29 29 H 1.08007 * 120.06572 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6445 -4.2744 1.0848 12 6 3.6195 -5.3497 0.6657 13 6 3.7023 -5.2539 -0.8385 14 6 4.4098 -5.9546 -1.7881 15 6 4.2844 -5.6269 -3.1266 16 6 3.4439 -4.5913 -3.5132 17 8 3.3230 -4.2729 -4.8288 18 6 2.7280 -3.8830 -2.5637 19 6 2.8522 -4.2109 -1.2120 20 1 -0.4849 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.3417 -4.0549 2.0980 24 1 4.5972 -5.1671 1.1117 25 1 3.2475 -6.3313 0.9594 26 1 5.0635 -6.7605 -1.4888 27 1 4.8404 -6.1770 -3.8712 28 1 3.9568 -3.6088 -5.1326 29 1 2.0748 -3.0783 -2.8677 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260940023.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:43 Heat of formation + Delta-G solvation = -8.030475 kcal Electronic energy + Delta-G solvation = -13583.543900 eV Core-core repulsion = 11243.609770 eV Total energy + Delta-G solvation = -2339.934131 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.99697 -37.67814 -34.68254 -32.98212 -30.95656 -29.33927 -27.44964 -25.55496 -22.73474 -22.00265 -20.86462 -18.69499 -17.02588 -16.30937 -15.56094 -15.10153 -14.84088 -14.41948 -13.99557 -13.36967 -13.25425 -12.42396 -12.27604 -11.68771 -11.50441 -11.36578 -11.10538 -10.96149 -10.67385 -10.50115 -10.05127 -9.81662 -9.46798 -8.94541 -8.41343 -8.18320 -7.49192 -6.03676 -4.07217 1.35375 1.63887 3.08882 3.31237 3.35680 3.39084 4.16264 4.44376 4.53129 4.84115 5.15321 5.31425 5.32390 5.51770 5.66576 5.84177 5.96616 6.01354 6.14963 6.32314 6.45592 6.66419 6.76808 7.01845 7.12821 7.14483 7.43833 7.62232 7.87440 7.90882 7.92621 8.34234 8.97633 9.56354 11.06415 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.008868 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.471722 B = 3156.831571 C = 3729.820646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.057 3.943 10 C -0.048 4.048 11 C -0.197 4.197 12 C -0.055 4.055 13 C -0.120 4.120 14 C -0.093 4.093 15 C -0.155 4.155 16 C 0.093 3.907 17 O -0.501 6.501 18 C -0.113 4.113 19 C -0.031 4.031 20 H 0.262 0.738 21 H 0.027 0.973 22 H 0.030 0.970 23 H 0.139 0.861 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.386 0.614 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 -9.440 -3.137 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.020 3.980 10 C -0.048 4.048 11 C -0.215 4.215 12 C -0.091 4.091 13 C -0.120 4.120 14 C -0.111 4.111 15 C -0.173 4.173 16 C 0.049 3.951 17 O -0.311 6.311 18 C -0.132 4.132 19 C -0.031 4.031 20 H 0.072 0.928 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.157 0.843 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.241 0.759 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.584 -9.735 -3.134 12.732 hybrid contribution 0.823 1.391 -0.128 1.621 sum 8.407 -8.344 -3.261 12.286 Atomic orbital electron populations 1.69949 1.06014 1.26892 1.50493 1.25001 0.94861 0.99174 0.95246 0.86618 0.79556 0.82936 0.78693 1.20227 1.21206 1.20175 1.20994 0.92958 0.89933 1.50982 0.92655 1.18087 0.92408 0.89292 0.98209 1.21336 0.97185 0.95988 0.90293 1.23303 1.00880 0.98673 0.98633 1.19852 0.99591 0.99125 0.90491 1.20652 0.98073 0.97162 0.96103 1.20037 0.99787 0.99798 0.91481 1.21220 1.00475 0.99691 0.95921 1.18243 0.97639 0.96157 0.83014 1.84807 1.60931 1.63276 1.22055 1.21285 1.00413 0.99936 0.91524 1.19814 0.95698 0.94610 0.92975 0.92791 0.95478 0.95178 0.84347 0.89311 0.89443 0.86168 0.85818 0.75924 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.84 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.51 -14.41 9.09 -34.44 -0.31 -14.72 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 9 C 0.06 1.49 5.38 -29.03 -0.16 1.33 15 10 C -0.05 -1.06 5.33 -102.78 -0.55 -1.61 15 11 C -0.20 -3.72 10.90 -36.05 -0.39 -4.12 15 12 C -0.05 -0.85 6.76 -28.73 -0.19 -1.04 15 13 C -0.12 -2.07 6.38 -104.20 -0.66 -2.73 15 14 C -0.09 -1.37 10.02 -39.77 -0.40 -1.77 15 15 C -0.15 -2.29 9.99 -39.31 -0.39 -2.68 15 16 C 0.09 1.57 6.69 -39.29 -0.26 1.31 15 17 O -0.50 -7.43 13.49 -19.44 -0.26 -7.70 15 18 C -0.11 -2.22 10.01 -39.00 -0.39 -2.61 15 19 C -0.03 -0.63 6.17 -105.08 -0.65 -1.28 15 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 21 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.03 0.82 8.12 -51.93 -0.42 0.40 15 23 H 0.14 2.43 8.06 -52.49 -0.42 2.01 15 24 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.39 3.84 9.06 45.56 0.41 4.25 15 29 H 0.13 2.76 8.06 -52.48 -0.42 2.34 15 LS Contribution 259.72 15.07 3.91 3.91 Total: -1.00 -31.49 259.72 -7.60 -39.09 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -2.51 Total: 2.30 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -4.46 Total: -28.35 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.26 Total: -7.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.49 -7.60 -39.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940023.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.056 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds