Wall clock time and date at job start Mon Mar 30 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99872 * 2 1 4 4 H 1.48507 * 109.47082 * 239.99966 * 3 2 1 5 5 H 1.48500 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47018 * 120.00103 * 3 2 1 7 7 C 1.37876 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.50708 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.32142 * 124.46640 * 94.97363 * 10 9 7 12 12 C 1.51079 * 108.27926 * 180.23224 * 11 10 9 13 13 C 1.50954 * 105.46599 * 359.64112 * 12 11 10 14 14 C 1.37600 * 133.12943 * 180.09291 * 13 12 11 15 15 C 1.38365 * 120.02412 * 180.34827 * 14 13 12 16 16 C 1.38857 * 120.05649 * 359.96113 * 15 14 13 17 17 O 1.35904 * 119.87621 * 180.02562 * 16 15 14 18 18 C 1.38412 * 120.24469 * 359.97438 * 16 15 14 19 19 C 1.39637 * 119.85861 * 0.02562 * 18 16 15 20 20 H 0.97002 * 119.99574 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47370 * 60.00476 * 9 7 2 22 22 H 1.09004 * 109.47470 * 299.99866 * 9 7 2 23 23 H 1.08002 * 125.85740 * 359.96151 * 11 10 9 24 24 H 1.09004 * 110.24970 * 118.77049 * 12 11 10 25 25 H 1.09003 * 110.24538 * 240.77359 * 12 11 10 26 26 H 1.07998 * 119.99032 * 0.33361 * 14 13 12 27 27 H 1.07997 * 119.97299 * 179.97438 * 15 14 13 28 28 H 0.96692 * 114.00491 * 269.97417 * 17 16 15 29 29 H 1.08007 * 120.06572 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6445 -4.2744 1.0848 12 6 3.6195 -5.3497 0.6657 13 6 3.7023 -5.2539 -0.8385 14 6 4.4098 -5.9546 -1.7881 15 6 4.2844 -5.6269 -3.1266 16 6 3.4439 -4.5913 -3.5132 17 8 3.3230 -4.2729 -4.8288 18 6 2.7280 -3.8830 -2.5637 19 6 2.8522 -4.2109 -1.2120 20 1 -0.4849 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.3417 -4.0549 2.0980 24 1 4.5972 -5.1671 1.1117 25 1 3.2475 -6.3313 0.9594 26 1 5.0635 -6.7605 -1.4888 27 1 4.8404 -6.1770 -3.8712 28 1 3.9568 -3.6088 -5.1326 29 1 2.0748 -3.0783 -2.8677 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260940023.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:43 Heat of formation + Delta-G solvation = -28.435149 kcal Electronic energy + Delta-G solvation = -13584.428713 eV Core-core repulsion = 11243.609770 eV Total energy + Delta-G solvation = -2340.818944 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31968 -38.95693 -36.14221 -34.96201 -32.47565 -30.98431 -28.88630 -27.24709 -24.59727 -23.42582 -22.12678 -20.06922 -18.56259 -18.35751 -17.05627 -16.42653 -16.31477 -16.03342 -15.28648 -14.80780 -14.62838 -14.31948 -14.00805 -13.33232 -13.03992 -12.85092 -12.69166 -12.49865 -12.39021 -12.19763 -11.75733 -11.60294 -11.21670 -10.63401 -10.54007 -9.45531 -8.95929 -8.22584 -6.36472 0.03638 0.35457 1.35361 1.39246 1.47217 1.66391 2.38142 2.85610 3.07378 3.29272 3.61289 3.81159 4.08614 4.17963 4.40599 4.66448 4.69425 4.84428 4.86919 4.98575 5.02367 5.26151 5.27461 5.35650 5.46992 5.69715 5.74838 5.84627 5.94087 6.07446 6.22178 6.75834 6.84827 7.32095 8.86851 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.008868 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.471722 B = 3156.831571 C = 3729.820646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.067 3.933 10 C -0.101 4.101 11 C -0.174 4.174 12 C -0.046 4.046 13 C -0.123 4.123 14 C -0.078 4.078 15 C -0.144 4.144 16 C 0.095 3.905 17 O -0.509 6.509 18 C -0.151 4.151 19 C -0.065 4.065 20 H 0.266 0.734 21 H -0.011 1.011 22 H 0.004 0.996 23 H 0.146 0.854 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.168 0.832 27 H 0.162 0.838 28 H 0.407 0.593 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.252 -11.136 -2.995 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.030 3.970 10 C -0.101 4.101 11 C -0.192 4.192 12 C -0.082 4.082 13 C -0.123 4.123 14 C -0.096 4.096 15 C -0.162 4.162 16 C 0.051 3.949 17 O -0.322 6.322 18 C -0.170 4.170 19 C -0.066 4.066 20 H 0.075 0.925 21 H 0.008 0.992 22 H 0.023 0.977 23 H 0.164 0.836 24 H 0.137 0.863 25 H 0.141 0.859 26 H 0.185 0.815 27 H 0.179 0.821 28 H 0.265 0.735 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.652 -11.431 -2.998 15.909 hybrid contribution -0.151 1.864 -0.201 1.881 sum 10.501 -9.566 -3.199 14.561 Atomic orbital electron populations 1.70086 1.07769 1.28030 1.51307 1.25963 0.95775 1.03205 0.94530 0.85485 0.78322 0.77962 0.79219 1.19452 1.20399 1.18888 1.21303 0.92925 0.91289 1.50969 0.92974 1.17774 0.92800 0.91368 0.95060 1.21157 0.98988 0.96734 0.93176 1.23742 0.99506 0.97990 0.97950 1.19928 0.99811 0.99044 0.89396 1.20953 0.97584 0.96279 0.97503 1.20537 0.98730 0.99631 0.90654 1.21628 0.99209 0.98307 0.97093 1.18336 0.97309 0.96358 0.82947 1.84744 1.62229 1.64116 1.21068 1.21245 1.02192 1.00836 0.92745 1.19854 0.97628 0.96679 0.92399 0.92547 0.99228 0.97746 0.83612 0.86259 0.85935 0.81492 0.82094 0.73477 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.62 15 2 C 0.00 0.19 5.46 84.65 0.46 0.65 15 3 Si 0.97 45.23 29.54 68.60 2.03 47.25 15 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.26 -11.79 7.11 99.48 0.71 -11.08 15 7 C -0.53 -31.31 9.09 25.60 0.23 -31.07 15 8 H 0.05 3.05 7.74 -2.91 -0.02 3.02 15 9 C 0.07 3.79 5.38 29.10 0.16 3.95 15 10 C -0.10 -4.65 5.33 -18.41 -0.10 -4.75 15 11 C -0.17 -6.46 10.90 24.81 0.27 -6.19 15 12 C -0.05 -1.27 6.76 29.30 0.20 -1.07 15 13 C -0.12 -3.91 6.38 -19.59 -0.12 -4.04 15 14 C -0.08 -1.93 10.02 22.15 0.22 -1.70 15 15 C -0.14 -3.71 9.99 22.45 0.22 -3.49 15 16 C 0.09 3.11 6.69 22.46 0.15 3.26 15 17 O -0.51 -14.68 13.49 -92.47 -1.25 -15.93 15 18 C -0.15 -6.27 10.01 22.65 0.23 -6.04 15 19 C -0.07 -2.73 6.17 -20.16 -0.12 -2.85 15 20 H 0.27 15.45 8.31 -92.71 -0.77 14.68 15 21 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 15 22 H 0.00 0.25 8.12 -2.38 -0.02 0.23 15 23 H 0.15 5.02 8.06 -2.91 -0.02 5.00 15 24 H 0.12 2.65 8.14 -2.38 -0.02 2.63 15 25 H 0.12 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.17 2.63 8.06 -2.91 -0.02 2.60 15 27 H 0.16 2.97 8.06 -2.91 -0.02 2.94 15 28 H 0.41 7.65 9.06 -74.06 -0.67 6.98 15 29 H 0.10 4.50 8.06 -2.91 -0.02 4.48 15 Total: -1.00 -73.01 259.72 3.34 -69.67 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.49 Total: 9.98 kcal Atomic # 6 Polarization: -55.15 SS G_CDS: 1.80 Total: -53.35 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.28 Total: -57.62 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.25 Total: -15.93 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.01 3.34 -69.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940023.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.231 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds