Wall clock time and date at job start Mon Mar 30 2020 02:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38735 * 119.65721 * 2 1 4 4 C 1.36736 * 120.41717 * 180.02562 * 3 2 1 5 5 C 1.39409 * 119.71638 * 359.97438 * 4 3 2 6 6 C 1.46789 * 134.36828 * 180.02562 * 5 4 3 7 7 C 1.50696 * 126.90767 * 359.95597 * 6 5 4 8 8 C 1.50699 * 109.46869 * 85.00163 * 7 6 5 9 9 H 1.08002 * 120.00443 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99679 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00196 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99696 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47728 * 59.99432 * 12 10 8 14 14 H 1.48502 * 109.46804 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46933 * 299.99190 * 12 10 8 16 16 C 1.33994 * 106.17988 * 179.97438 * 6 5 4 17 17 O 1.34443 * 110.15976 * 0.02562 * 16 6 5 18 18 C 1.34814 * 110.88890 * 359.97438 * 17 16 6 19 19 C 1.37850 * 119.65416 * 179.79679 * 2 1 3 20 20 H 1.08994 * 109.46881 * 90.00505 * 1 2 3 21 21 H 1.08998 * 109.46964 * 210.00137 * 1 2 3 22 22 H 1.08995 * 109.46963 * 330.00108 * 1 2 3 23 23 H 1.08004 * 119.79260 * 359.97438 * 3 2 1 24 24 H 1.08004 * 120.14531 * 179.97438 * 4 3 2 25 25 H 1.08998 * 109.46889 * 204.99914 * 7 6 5 26 26 H 1.08996 * 109.47289 * 325.00191 * 7 6 5 27 27 H 0.96998 * 119.99805 * 180.02562 * 11 10 8 28 28 H 1.08002 * 124.91687 * 180.02562 * 16 6 5 29 29 H 1.07996 * 120.09813 * 359.92732 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2056 0.0000 4 6 3.5607 1.2237 -0.0005 5 6 4.2678 0.0223 -0.0005 6 6 5.6928 -0.3302 -0.0005 7 6 6.8606 0.6223 -0.0014 8 6 7.1718 1.0367 1.4136 9 1 6.5826 0.6495 2.2318 10 6 8.2082 1.9111 1.6637 11 7 8.9253 2.3831 0.6674 12 14 8.5944 2.4243 3.4178 13 1 8.9367 1.2232 4.2212 14 1 9.7452 3.3630 3.4169 15 1 7.4089 3.0945 4.0100 16 6 5.7462 -1.6690 0.0001 17 8 4.5037 -2.1824 -0.0002 18 6 3.5785 -1.2018 -0.0003 19 6 2.1891 -1.1979 0.0042 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6445 2.1357 -0.0004 24 1 4.0907 2.1648 -0.0009 25 1 7.7307 0.1298 -0.4355 26 1 6.6100 1.5038 -0.5914 27 1 9.6546 2.9979 0.8435 28 1 6.6558 -2.2514 0.0006 29 1 1.6450 -2.1309 0.0087 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260945303.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:03 Heat of formation + Delta-G solvation = 9.366980 kcal Electronic energy + Delta-G solvation = -13566.738710 eV Core-core repulsion = 11227.558990 eV Total energy + Delta-G solvation = -2339.179720 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.75460 -37.77490 -34.06055 -32.41028 -30.95171 -30.02785 -27.42503 -26.03576 -23.23319 -22.65994 -20.88488 -19.16082 -16.66476 -16.39942 -16.21242 -15.36404 -14.90984 -14.41997 -13.83892 -13.47571 -13.40068 -12.46092 -12.36107 -12.06074 -11.94798 -11.65198 -11.33602 -11.08991 -10.79462 -10.65506 -10.21852 -9.90060 -9.61770 -8.94610 -8.43670 -8.08825 -7.37386 -6.05643 -4.09620 1.41761 1.82446 3.13497 3.31203 3.35259 3.39685 3.42118 4.16893 4.44118 5.04879 5.10389 5.23912 5.28854 5.34736 5.60353 5.64303 5.70327 5.87370 6.00426 6.13674 6.29941 6.49737 6.66500 6.83088 6.92053 7.16245 7.20701 7.49340 7.59691 7.89665 7.90259 8.30785 8.94947 9.54364 11.03909 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.037020 B = 0.007729 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.173461 B = 3621.900894 C = 3988.831298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.074 4.074 3 C -0.150 4.150 4 C -0.051 4.051 5 C -0.124 4.124 6 C -0.116 4.116 7 C 0.078 3.922 8 C -0.513 4.513 9 H 0.056 0.944 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C -0.044 4.044 17 O -0.205 6.205 18 C 0.049 3.951 19 C -0.119 4.119 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.122 0.878 24 H 0.130 0.870 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.202 0.798 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 -4.469 -1.838 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.074 4.074 3 C -0.168 4.168 4 C -0.069 4.069 5 C -0.125 4.125 6 C -0.117 4.117 7 C 0.041 3.959 8 C -0.551 4.551 9 H 0.074 0.926 10 C -0.142 4.142 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.107 4.107 17 O -0.107 6.107 18 C 0.001 3.999 19 C -0.138 4.138 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.140 0.860 24 H 0.148 0.852 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.218 0.782 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.359 -4.625 -1.878 13.329 hybrid contribution 0.526 0.440 1.009 1.220 sum -11.833 -4.185 -0.869 12.582 Atomic orbital electron populations 1.20718 0.90953 1.02563 1.02078 1.19508 0.95614 0.92104 1.00144 1.20556 0.93880 0.97228 1.05166 1.20409 0.93320 0.97299 0.95829 1.20051 0.93716 0.93581 1.05106 1.22061 0.94008 0.94633 1.00973 1.17763 0.88320 0.92145 0.97692 1.21034 1.15105 1.26918 0.92013 0.92610 1.24999 0.96002 0.96012 0.97233 1.69941 1.20342 1.32209 1.30887 0.86598 0.77853 0.78499 0.84758 1.20165 1.21198 1.20163 1.23636 0.84779 0.94082 1.08214 1.83909 1.14759 1.34744 1.77318 1.19638 0.90937 0.86604 1.02745 1.19570 0.88428 0.98264 1.07523 0.91347 0.91760 0.91515 0.86010 0.85228 0.95083 0.95106 0.92749 0.78169 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.99 36.01 0.36 -0.73 15 2 C -0.07 -1.07 5.88 -104.58 -0.61 -1.68 15 3 C -0.15 -2.35 9.62 -39.94 -0.38 -2.73 15 4 C -0.05 -0.96 10.05 -39.69 -0.40 -1.36 15 5 C -0.12 -2.62 6.38 -105.16 -0.67 -3.29 15 6 C -0.12 -2.63 5.54 -102.66 -0.57 -3.20 15 7 C 0.08 2.02 5.52 -29.04 -0.16 1.86 15 8 C -0.51 -14.45 9.09 -34.44 -0.31 -14.76 15 9 H 0.06 1.58 7.74 -52.49 -0.41 1.18 15 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 11 N -0.89 -26.31 13.29 55.43 0.74 -25.57 15 12 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 15 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 16 C -0.04 -0.88 11.89 29.24 0.35 -0.54 15 17 O -0.20 -4.03 10.58 3.91 0.04 -3.98 15 18 C 0.05 0.94 7.42 -38.47 -0.29 0.66 15 19 C -0.12 -1.91 9.70 -39.46 -0.38 -2.30 15 20 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.06 0.58 8.08 -51.93 -0.42 0.16 15 22 H 0.07 0.61 8.08 -51.93 -0.42 0.19 15 23 H 0.12 1.55 8.06 -52.48 -0.42 1.13 15 24 H 0.13 2.46 8.06 -52.48 -0.42 2.03 15 25 H 0.03 0.83 8.14 -51.93 -0.42 0.40 15 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 28 H 0.20 3.34 8.06 -52.49 -0.42 2.92 15 29 H 0.12 1.64 8.06 -52.49 -0.42 1.21 15 LS Contribution 260.14 15.07 3.92 3.92 Total: -1.00 -30.67 260.14 -6.83 -37.50 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -3.34 Total: -1.93 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -3.17 Total: -26.50 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.74 Total: -25.57 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.67 -6.83 -37.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260945303.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.869 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds