Wall clock time and date at job start Mon Mar 30 2020 02:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38735 * 119.65721 * 2 1 4 4 C 1.36736 * 120.41717 * 180.02562 * 3 2 1 5 5 C 1.39409 * 119.71638 * 359.97438 * 4 3 2 6 6 C 1.46789 * 134.36828 * 180.02562 * 5 4 3 7 7 C 1.50696 * 126.90767 * 359.95597 * 6 5 4 8 8 C 1.50699 * 109.46869 * 85.00163 * 7 6 5 9 9 H 1.08002 * 120.00443 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99679 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00196 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99696 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47728 * 59.99432 * 12 10 8 14 14 H 1.48502 * 109.46804 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46933 * 299.99190 * 12 10 8 16 16 C 1.33994 * 106.17988 * 179.97438 * 6 5 4 17 17 O 1.34443 * 110.15976 * 0.02562 * 16 6 5 18 18 C 1.34814 * 110.88890 * 359.97438 * 17 16 6 19 19 C 1.37850 * 119.65416 * 179.79679 * 2 1 3 20 20 H 1.08994 * 109.46881 * 90.00505 * 1 2 3 21 21 H 1.08998 * 109.46964 * 210.00137 * 1 2 3 22 22 H 1.08995 * 109.46963 * 330.00108 * 1 2 3 23 23 H 1.08004 * 119.79260 * 359.97438 * 3 2 1 24 24 H 1.08004 * 120.14531 * 179.97438 * 4 3 2 25 25 H 1.08998 * 109.46889 * 204.99914 * 7 6 5 26 26 H 1.08996 * 109.47289 * 325.00191 * 7 6 5 27 27 H 0.96998 * 119.99805 * 180.02562 * 11 10 8 28 28 H 1.08002 * 124.91687 * 180.02562 * 16 6 5 29 29 H 1.07996 * 120.09813 * 359.92732 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2056 0.0000 4 6 3.5607 1.2237 -0.0005 5 6 4.2678 0.0223 -0.0005 6 6 5.6928 -0.3302 -0.0005 7 6 6.8606 0.6223 -0.0014 8 6 7.1718 1.0367 1.4136 9 1 6.5826 0.6495 2.2318 10 6 8.2082 1.9111 1.6637 11 7 8.9253 2.3831 0.6674 12 14 8.5944 2.4243 3.4178 13 1 8.9367 1.2232 4.2212 14 1 9.7452 3.3630 3.4169 15 1 7.4089 3.0945 4.0100 16 6 5.7462 -1.6690 0.0001 17 8 4.5037 -2.1824 -0.0002 18 6 3.5785 -1.2018 -0.0003 19 6 2.1891 -1.1979 0.0042 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6445 2.1357 -0.0004 24 1 4.0907 2.1648 -0.0009 25 1 7.7307 0.1298 -0.4355 26 1 6.6100 1.5038 -0.5914 27 1 9.6546 2.9979 0.8435 28 1 6.6558 -2.2514 0.0006 29 1 1.6450 -2.1309 0.0087 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260945303.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:02 Heat of formation + Delta-G solvation = -7.793490 kcal Electronic energy + Delta-G solvation = -13567.482844 eV Core-core repulsion = 11227.558990 eV Total energy + Delta-G solvation = -2339.923854 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.25604 -39.08131 -35.96047 -34.16659 -32.41158 -31.38756 -29.32790 -27.23859 -25.28054 -24.06773 -22.21075 -20.75981 -18.56839 -18.04363 -17.76364 -16.92849 -16.55252 -16.07167 -15.17246 -14.74932 -14.42404 -14.35158 -14.13032 -13.89355 -13.09657 -12.89561 -12.80649 -12.66198 -12.55670 -12.37551 -11.91233 -11.76439 -11.61477 -10.62971 -10.54729 -9.48231 -8.89841 -8.21860 -6.36069 0.04074 0.44854 1.36934 1.40348 1.47757 1.57854 1.96389 2.39188 2.78894 3.07582 3.69564 3.80793 4.03145 4.16441 4.31752 4.44727 4.61733 4.73325 4.86275 4.92742 4.94486 5.24413 5.24643 5.30597 5.46285 5.53911 5.59261 5.67233 5.70110 5.86066 6.15851 6.32777 6.74386 7.32440 8.86455 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.037020 B = 0.007729 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.173461 B = 3621.900894 C = 3988.831298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.082 4.082 5 C -0.158 4.158 6 C -0.163 4.163 7 C 0.091 3.909 8 C -0.530 4.530 9 H 0.048 0.952 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.277 1.277 15 H -0.270 1.270 16 C -0.025 4.025 17 O -0.203 6.203 18 C 0.030 3.970 19 C -0.118 4.118 20 H 0.087 0.913 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.155 0.845 24 H 0.113 0.887 25 H 0.014 0.986 26 H 0.001 0.999 27 H 0.267 0.733 28 H 0.229 0.771 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.932 -5.060 -0.847 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.063 4.063 3 C -0.155 4.155 4 C -0.101 4.101 5 C -0.159 4.159 6 C -0.164 4.164 7 C 0.054 3.946 8 C -0.568 4.568 9 H 0.066 0.934 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.202 1.202 15 H -0.196 1.196 16 C -0.088 4.088 17 O -0.105 6.105 18 C -0.017 4.017 19 C -0.136 4.136 20 H 0.106 0.894 21 H 0.100 0.900 22 H 0.101 0.899 23 H 0.172 0.828 24 H 0.131 0.869 25 H 0.032 0.968 26 H 0.019 0.981 27 H 0.076 0.924 28 H 0.245 0.755 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.856 -5.224 -0.892 15.773 hybrid contribution 1.171 0.631 0.642 1.477 sum -13.684 -4.593 -0.249 14.437 Atomic orbital electron populations 1.20835 0.87052 1.04340 1.03792 1.20097 0.98169 0.90856 0.97152 1.20969 0.92455 0.99447 1.02587 1.20502 0.95055 0.96127 0.98388 1.20239 0.93188 0.95364 1.07115 1.21852 0.94185 0.95452 1.04914 1.17404 0.89202 0.91716 0.96274 1.21291 1.15339 1.27392 0.92765 0.93350 1.25886 0.95630 0.95775 1.01742 1.70059 1.20824 1.32717 1.33176 0.85510 0.77892 0.78420 0.79309 1.19211 1.20242 1.19553 1.24011 0.85852 0.93411 1.05540 1.83906 1.14573 1.34736 1.77300 1.20103 0.92150 0.85607 1.03872 1.20099 0.86957 1.00406 1.06170 0.89434 0.89981 0.89876 0.82763 0.86936 0.96819 0.98087 0.92421 0.75501 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.99 71.24 0.71 -0.87 15 2 C -0.06 -1.60 5.88 -19.84 -0.12 -1.72 15 3 C -0.14 -4.01 9.62 22.04 0.21 -3.80 15 4 C -0.08 -3.22 10.05 22.20 0.22 -2.99 15 5 C -0.16 -6.92 6.38 -20.21 -0.13 -7.05 15 6 C -0.16 -7.77 5.54 -18.59 -0.10 -7.87 15 7 C 0.09 5.04 5.52 29.10 0.16 5.21 15 8 C -0.53 -31.07 9.09 25.60 0.23 -30.84 15 9 H 0.05 2.84 7.74 -2.91 -0.02 2.81 15 10 C 0.01 0.47 5.46 84.66 0.46 0.93 15 11 N -0.93 -56.15 13.29 21.45 0.28 -55.87 15 12 Si 0.96 44.77 29.54 68.60 2.03 46.79 15 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 14 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 15 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 16 C -0.02 -1.01 11.89 66.85 0.79 -0.22 15 17 O -0.20 -7.88 10.58 -8.93 -0.09 -7.97 15 18 C 0.03 1.14 7.42 22.99 0.17 1.31 15 19 C -0.12 -3.46 9.70 22.35 0.22 -3.25 15 20 H 0.09 1.10 8.14 -2.39 -0.02 1.08 15 21 H 0.08 1.03 8.08 -2.39 -0.02 1.01 15 22 H 0.08 1.06 8.08 -2.39 -0.02 1.04 15 23 H 0.15 3.43 8.06 -2.91 -0.02 3.41 15 24 H 0.11 4.59 8.06 -2.91 -0.02 4.57 15 25 H 0.01 0.77 8.14 -2.39 -0.02 0.75 15 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 15 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 15 28 H 0.23 7.57 8.06 -2.91 -0.02 7.55 15 29 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 Total: -1.00 -68.76 260.14 6.19 -62.57 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.14 Total: 5.62 kcal Atomic # 6 Polarization: -53.98 SS G_CDS: 2.84 Total: -51.15 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.09 Total: -7.97 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.76 6.19 -62.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260945303.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.781 kcal (2) G-P(sol) polarization free energy of solvation -68.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds