Wall clock time and date at job start Mon Mar 30 2020 02:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30539 * 1 3 3 Si 1.86803 * 120.00283 * 2 1 4 4 H 1.48494 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46877 * 300.00092 * 3 2 1 6 6 H 1.48498 * 109.47086 * 59.99656 * 3 2 1 7 7 C 1.40655 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99482 * 191.23073 * 7 2 1 9 9 C 1.38803 * 120.00516 * 11.23108 * 7 2 1 10 10 C 1.38195 * 119.78654 * 203.74320 * 9 7 2 11 11 C 1.46275 * 119.25598 * 182.47293 * 10 9 7 12 12 C 1.40213 * 120.70912 * 196.37951 * 11 10 9 13 13 C 1.37834 * 119.67417 * 178.38345 * 12 11 10 14 14 C 1.38471 * 120.27731 * 0.42469 * 13 12 11 15 15 C 1.39052 * 120.49455 * 0.35388 * 14 13 12 16 16 O 1.35912 * 120.01956 * 179.84123 * 15 14 13 17 17 C 1.38200 * 119.96588 * 359.56478 * 15 14 13 18 18 C 1.50550 * 120.41868 * 179.02418 * 17 15 14 19 19 C 1.50485 * 119.78007 * 23.72217 * 9 7 2 20 20 H 0.96999 * 119.99841 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.36821 * 2.47675 * 10 9 7 22 22 H 1.08000 * 120.16490 * 358.41593 * 12 11 10 23 23 H 1.08005 * 119.86183 * 180.42038 * 13 12 11 24 24 H 1.08005 * 119.75315 * 180.37149 * 14 13 12 25 25 H 0.96702 * 113.99925 * 269.72113 * 16 15 14 26 26 H 1.09000 * 109.31824 * 265.43068 * 18 17 15 27 27 H 1.08990 * 109.32399 * 25.06435 * 18 17 15 28 28 H 1.08999 * 109.22979 * 23.63365 * 19 9 7 29 29 H 1.09000 * 109.23032 * 264.27613 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.6994 1.3463 -0.0006 5 1 1.8807 2.3964 -1.2125 6 1 1.8807 2.3965 1.2124 7 6 2.0086 -1.2182 0.0005 8 1 3.0731 -1.2270 0.1827 9 6 1.3345 -2.4088 -0.2330 10 6 1.8613 -3.5987 0.2323 11 6 1.1697 -4.8523 -0.0672 12 6 1.4617 -6.0205 0.6511 13 6 0.7735 -7.1821 0.3738 14 6 -0.1958 -7.2002 -0.6148 15 6 -0.4816 -6.0511 -1.3440 16 8 -1.4326 -6.0806 -2.3145 17 6 0.1980 -4.8777 -1.0775 18 6 -0.0876 -3.6333 -1.8754 19 6 0.0345 -2.3955 -0.9910 20 1 -0.4850 0.8401 0.0004 21 1 2.7734 -3.6028 0.8106 22 1 2.2218 -6.0101 1.4183 23 1 0.9912 -8.0820 0.9300 24 1 -0.7342 -8.1135 -0.8210 25 1 -1.0936 -6.3097 -3.1906 26 1 0.6244 -3.5608 -2.6975 27 1 -1.0990 -3.6873 -2.2780 28 1 -0.0081 -1.5029 -1.6150 29 1 -0.7938 -2.3772 -0.2827 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137891.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:52 Heat of formation + Delta-G solvation = -48.590213 kcal Electronic energy + Delta-G solvation = -13849.025691 eV Core-core repulsion = 11507.332758 eV Total energy + Delta-G solvation = -2341.692933 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71255 -38.16510 -36.96172 -34.93463 -32.18246 -31.00281 -29.41231 -27.13481 -24.25219 -23.05304 -22.36642 -20.13191 -18.54092 -18.02553 -17.23050 -16.68305 -16.21889 -16.01032 -15.01657 -14.87567 -14.32638 -14.11559 -13.42215 -13.28235 -13.21763 -12.92340 -12.63797 -12.46708 -12.29909 -12.21226 -11.82158 -11.20477 -11.12488 -10.87496 -10.37924 -9.29692 -8.97768 -8.63967 -6.39791 0.39955 0.61353 1.29650 1.36719 1.52648 1.90334 2.13587 2.85790 3.29448 3.54482 4.08400 4.24364 4.36517 4.52726 4.59837 4.75787 4.76023 4.90900 5.00105 5.12846 5.24049 5.29953 5.46916 5.53817 5.66359 5.73083 5.80462 5.96795 6.25119 6.30530 6.37140 6.88569 6.95908 7.01476 8.07584 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.050984 B = 0.008061 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.060482 B = 3472.512726 C = 3887.732608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.258 1.258 5 H -0.256 1.256 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.090 3.910 10 C -0.424 4.424 11 C 0.038 3.962 12 C -0.201 4.201 13 C -0.084 4.084 14 C -0.218 4.218 15 C 0.118 3.882 16 O -0.506 6.506 17 C -0.190 4.190 18 C -0.061 4.061 19 C -0.049 4.049 20 H 0.300 0.700 21 H 0.075 0.925 22 H 0.115 0.885 23 H 0.146 0.854 24 H 0.138 0.862 25 H 0.402 0.598 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -3.682 -3.484 5.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.180 1.180 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.087 3.913 10 C -0.445 4.445 11 C 0.038 3.962 12 C -0.219 4.219 13 C -0.102 4.102 14 C -0.237 4.237 15 C 0.074 3.926 16 O -0.318 6.318 17 C -0.190 4.190 18 C -0.098 4.098 19 C -0.086 4.086 20 H 0.112 0.888 21 H 0.094 0.906 22 H 0.133 0.867 23 H 0.163 0.837 24 H 0.156 0.844 25 H 0.260 0.740 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.829 -3.364 -3.038 4.608 hybrid contribution 0.690 0.601 -0.114 0.922 sum -0.139 -2.763 -3.152 4.194 Atomic orbital electron populations 1.69741 1.09333 1.32031 1.31036 1.27168 0.95658 1.05196 0.90660 0.84978 0.79236 0.75015 0.79526 1.18198 1.17979 1.18613 1.19881 0.96681 0.91920 1.40275 0.90314 1.19615 0.91609 0.93153 0.86925 1.21048 1.08393 0.91319 1.23713 1.18939 0.92077 0.93734 0.91450 1.21249 1.04371 0.93264 1.03035 1.21048 0.94805 0.97701 0.96677 1.21287 1.02757 0.97926 1.01691 1.18230 0.89630 0.92278 0.92510 1.84694 1.33811 1.92663 1.20675 1.20352 1.00827 0.96113 1.01752 1.20144 1.00846 0.91937 0.96907 1.20100 0.95385 0.95937 0.97208 0.88840 0.90634 0.86703 0.83663 0.84401 0.74040 0.92281 0.90690 0.91608 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.52 10.70 21.96 0.23 -38.28 15 2 C 0.03 1.55 5.14 85.48 0.44 1.99 15 3 Si 0.99 35.31 29.58 68.60 2.03 37.34 15 4 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 5 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 7 C -0.46 -24.24 8.94 23.00 0.21 -24.03 15 8 H 0.08 4.08 7.88 -2.91 -0.02 4.05 15 9 C 0.09 4.89 5.49 -19.81 -0.11 4.78 15 10 C -0.42 -22.82 9.68 24.35 0.24 -22.58 15 11 C 0.04 1.88 5.80 -20.23 -0.12 1.76 15 12 C -0.20 -8.50 9.84 22.65 0.22 -8.27 15 13 C -0.08 -2.99 10.02 22.23 0.22 -2.77 15 14 C -0.22 -7.70 9.98 22.52 0.22 -7.48 15 15 C 0.12 4.63 6.67 22.46 0.15 4.78 15 16 O -0.51 -16.85 12.47 -92.56 -1.15 -18.01 15 17 C -0.19 -8.65 5.69 -19.44 -0.11 -8.76 15 18 C -0.06 -2.72 5.75 29.67 0.17 -2.55 15 19 C -0.05 -2.47 4.27 29.65 0.13 -2.34 15 20 H 0.30 12.75 8.29 -92.71 -0.77 11.98 15 21 H 0.08 4.09 8.06 -2.91 -0.02 4.07 15 22 H 0.11 4.55 8.06 -2.91 -0.02 4.52 15 23 H 0.15 3.96 8.06 -2.91 -0.02 3.94 15 24 H 0.14 3.99 8.06 -2.91 -0.02 3.97 15 25 H 0.40 9.08 9.06 -74.06 -0.67 8.41 15 26 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 27 H 0.07 3.05 7.38 -2.39 -0.02 3.03 15 28 H 0.07 3.30 6.64 -2.39 -0.02 3.28 15 29 H 0.04 2.30 7.97 -2.39 -0.02 2.28 15 Total: -1.00 -60.14 248.95 3.26 -56.88 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.49 Total: 27.54 kcal Atomic # 6 Polarization: -67.13 SS G_CDS: 1.66 Total: -65.47 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.23 Total: -38.28 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.15 Total: -18.01 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -60.14 3.26 -56.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137891.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.291 kcal (2) G-P(sol) polarization free energy of solvation -60.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds