Wall clock time and date at job start Mon Mar 30 2020 02:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35723 * 117.00101 * 2 1 4 4 C 1.39200 * 119.93193 * 359.97438 * 3 2 1 5 5 C 1.36464 * 120.34033 * 180.02562 * 4 3 2 6 6 C 1.40775 * 119.92638 * 0.02562 * 5 4 3 7 7 C 1.40627 * 119.16533 * 359.95489 * 6 5 4 8 8 C 1.36167 * 120.33547 * 0.09308 * 7 6 5 9 9 C 1.50947 * 106.97861 * 179.97438 * 7 6 5 10 10 C 1.51111 * 105.69870 * 0.06116 * 9 7 6 11 11 C 1.38780 * 126.24847 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99840 * 359.97438 * 11 10 9 13 13 C 1.40589 * 120.00032 * 180.02562 * 11 10 9 14 14 N 1.30585 * 119.99777 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99821 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47334 * 59.99835 * 15 13 11 17 17 H 1.48506 * 109.47151 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47320 * 299.99605 * 15 13 11 19 19 C 1.38019 * 107.50438 * 359.96458 * 10 9 7 20 20 H 1.09003 * 109.47021 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47017 * 299.99827 * 1 2 3 22 22 H 1.09002 * 109.47152 * 59.99770 * 1 2 3 23 23 H 1.07998 * 119.82646 * 0.02562 * 4 3 2 24 24 H 1.08007 * 120.03454 * 179.97438 * 5 4 3 25 25 H 1.07999 * 119.92880 * 179.97438 * 8 7 6 26 26 H 1.09002 * 110.21602 * 240.98213 * 9 7 6 27 27 H 1.09002 * 110.21656 * 119.14285 * 9 7 6 28 28 H 0.97000 * 119.99551 * 180.02562 * 14 13 11 29 29 H 1.08000 * 124.79720 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2857 2.3758 -0.0005 5 6 1.8966 3.5961 -0.0011 6 6 3.3020 3.6780 -0.0016 7 6 4.0575 2.4919 -0.0006 8 6 3.4358 1.2805 -0.0011 9 6 5.5120 2.8958 -0.0022 10 6 5.5167 4.4069 -0.0026 11 6 6.6384 5.2240 -0.0034 12 1 7.6256 4.7859 -0.0034 13 6 6.4897 6.6220 -0.0031 14 7 5.2961 7.1517 -0.0026 15 14 7.9996 7.7218 -0.0035 16 1 8.8115 7.4476 -1.2163 17 1 7.5755 9.1450 -0.0037 18 1 8.8124 7.4473 1.2088 19 6 4.2017 4.8262 -0.0022 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.2075 2.3148 -0.0005 24 1 1.3025 4.4981 -0.0019 25 1 4.0226 0.3737 -0.0008 26 1 6.0070 2.5174 -0.8965 27 1 6.0088 2.5178 0.8913 28 1 5.1936 8.1162 -0.0028 29 1 3.8838 5.8583 -0.0019 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158660.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:30 Heat of formation + Delta-G solvation = -23.091702 kcal Electronic energy + Delta-G solvation = -13526.257719 eV Core-core repulsion = 11185.670485 eV Total energy + Delta-G solvation = -2340.587234 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.00413 -39.25236 -36.54457 -34.51796 -32.05390 -30.19698 -28.50986 -27.31867 -26.32459 -22.94168 -21.47320 -20.80299 -18.49713 -18.06121 -17.32312 -16.45997 -16.44755 -15.92713 -15.18447 -15.01333 -14.34019 -14.12080 -13.90803 -13.43733 -13.10480 -12.92900 -12.74510 -12.45444 -11.98631 -11.86279 -11.75811 -11.53770 -11.42076 -11.23213 -9.96045 -9.61348 -8.56625 -8.52710 -6.24476 0.47432 0.67581 1.39759 1.42309 1.53566 2.07099 2.17443 2.57595 2.99588 3.53771 3.94386 4.11322 4.37181 4.41102 4.46388 4.49185 4.73393 4.77190 4.78226 4.90285 4.96603 5.02559 5.17876 5.44483 5.59222 5.70898 5.87758 6.00508 6.19157 6.42175 6.73919 6.81233 7.05824 7.12345 8.24859 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.081339 B = 0.006438 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.156246 B = 4347.964009 C = 4671.627028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.337 6.337 3 C 0.042 3.958 4 C -0.173 4.173 5 C -0.158 4.158 6 C -0.039 4.039 7 C -0.149 4.149 8 C -0.116 4.116 9 C -0.046 4.046 10 C 0.029 3.971 11 C -0.433 4.433 12 H 0.092 0.908 13 C 0.013 3.987 14 N -0.796 5.796 15 Si 1.001 2.999 16 H -0.255 1.255 17 H -0.270 1.270 18 H -0.255 1.255 19 C -0.382 4.382 20 H 0.121 0.879 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.144 0.856 24 H 0.112 0.888 25 H 0.129 0.871 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.289 0.711 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.359 -5.734 0.002 6.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.253 6.253 3 C -0.002 4.002 4 C -0.192 4.192 5 C -0.176 4.176 6 C -0.040 4.040 7 C -0.150 4.150 8 C -0.135 4.135 9 C -0.082 4.082 10 C 0.026 3.974 11 C -0.460 4.460 12 H 0.111 0.889 13 C -0.204 4.204 14 N -0.419 5.419 15 Si 0.820 3.180 16 H -0.179 1.179 17 H -0.194 1.194 18 H -0.179 1.179 19 C -0.404 4.404 20 H 0.140 0.860 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.162 0.838 24 H 0.130 0.870 25 H 0.147 0.853 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.397 -5.704 0.002 6.639 hybrid contribution 0.009 0.853 0.000 0.854 sum -3.388 -4.851 0.002 5.917 Atomic orbital electron populations 1.23222 0.77271 1.05101 1.01585 1.85880 1.22763 1.26498 1.90121 1.18714 0.91721 0.84365 1.05358 1.20809 1.00062 0.91448 1.06849 1.20486 0.93071 0.97374 1.06711 1.20399 0.93347 0.95137 0.95106 1.20201 0.96582 0.92874 1.05333 1.19210 0.91707 0.96717 1.05820 1.19755 0.92175 0.94674 1.01643 1.19860 0.94099 0.92241 0.91233 1.19420 0.94479 0.91719 1.40389 0.88940 1.27246 1.00754 1.00313 0.92100 1.69759 1.25760 1.14157 1.32258 0.84956 0.76541 0.76055 0.80406 1.17898 1.19392 1.17889 1.22531 0.91980 0.96333 1.29571 0.86035 0.92550 0.92558 0.83848 0.87028 0.85285 0.89379 0.89381 0.89990 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.63 15 2 O -0.34 -11.33 10.49 -90.45 -0.95 -12.28 15 3 C 0.04 1.67 6.71 22.74 0.15 1.83 15 4 C -0.17 -6.71 8.96 22.09 0.20 -6.51 15 5 C -0.16 -7.16 10.08 22.48 0.23 -6.94 15 6 C -0.04 -2.04 6.20 -20.10 -0.12 -2.17 15 7 C -0.15 -7.11 6.31 -19.69 -0.12 -7.23 15 8 C -0.12 -4.89 9.92 22.03 0.22 -4.67 15 9 C -0.05 -2.16 6.69 29.31 0.20 -1.96 15 10 C 0.03 1.55 6.07 -19.66 -0.12 1.43 15 11 C -0.43 -22.45 9.36 22.97 0.21 -22.23 15 12 H 0.09 4.34 7.86 -2.91 -0.02 4.31 15 13 C 0.01 0.63 5.51 85.45 0.47 1.10 15 14 N -0.80 -41.71 10.18 21.95 0.22 -41.48 15 15 Si 1.00 36.35 29.57 68.60 2.03 38.38 15 16 H -0.25 -8.86 7.11 99.48 0.71 -8.16 15 17 H -0.27 -9.38 7.11 99.48 0.71 -8.68 15 18 H -0.25 -8.86 7.11 99.48 0.71 -8.15 15 19 C -0.38 -21.86 9.84 24.19 0.24 -21.62 15 20 H 0.12 1.94 8.14 -2.39 -0.02 1.92 15 21 H 0.06 1.19 7.65 -2.39 -0.02 1.17 15 22 H 0.06 1.19 7.65 -2.39 -0.02 1.17 15 23 H 0.14 4.41 6.27 -2.91 -0.02 4.39 15 24 H 0.11 4.76 8.06 -2.91 -0.02 4.74 15 25 H 0.13 4.79 8.06 -2.91 -0.02 4.76 15 26 H 0.09 3.76 8.14 -2.39 -0.02 3.74 15 27 H 0.09 3.76 8.14 -2.39 -0.02 3.74 15 28 H 0.29 13.58 8.29 -92.71 -0.77 12.81 15 29 H 0.13 7.70 5.47 -2.91 -0.02 7.68 15 Total: -1.00 -62.39 250.73 5.12 -57.27 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 1.15 Total: 25.47 kcal Atomic # 6 Polarization: -70.02 SS G_CDS: 2.66 Total: -67.36 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.22 Total: -41.48 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.95 Total: -12.28 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Total: -62.39 5.12 -57.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158660.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.181 kcal (2) G-P(sol) polarization free energy of solvation -62.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds