Wall clock time and date at job start Mon Mar 30 2020 02:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38416 * 119.89856 * 2 1 4 4 C 1.37695 * 120.16441 * 180.02562 * 3 2 1 5 5 C 1.40381 * 120.06269 * 359.97438 * 4 3 2 6 6 C 1.39462 * 119.33724 * 0.02562 * 5 4 3 7 7 C 1.38213 * 119.90276 * 0.02562 * 6 5 4 8 8 C 1.50984 * 109.60266 * 179.97438 * 6 5 4 9 9 H 1.08998 * 110.13326 * 119.24018 * 8 6 5 10 10 C 1.50698 * 110.09159 * 240.79003 * 8 6 5 11 11 H 1.08001 * 119.99463 * 358.33782 * 10 8 6 12 12 C 1.37872 * 120.00240 * 178.33481 * 10 8 6 13 13 N 1.31509 * 119.99943 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 120.00212 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47079 * 59.99869 * 14 12 10 16 16 H 1.48489 * 109.47304 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46834 * 299.99987 * 14 12 10 18 18 C 1.53484 * 106.31034 * 0.02562 * 8 6 5 19 19 C 1.47228 * 130.01413 * 180.02562 * 5 4 3 20 20 O 1.21257 * 125.94883 * 0.26099 * 19 5 4 21 21 H 1.08998 * 109.47107 * 269.97745 * 1 2 3 22 22 H 1.08995 * 109.47168 * 29.97777 * 1 2 3 23 23 H 1.09002 * 109.46804 * 149.98292 * 1 2 3 24 24 H 1.08000 * 119.92388 * 0.04459 * 3 2 1 25 25 H 1.07998 * 119.97358 * 179.97438 * 4 3 2 26 26 H 1.08004 * 119.83471 * 180.02562 * 7 6 5 27 27 H 0.97006 * 120.00532 * 179.97438 * 13 12 10 28 28 H 1.09005 * 110.27390 * 241.03592 * 18 8 6 29 29 H 1.08996 * 110.27469 * 118.95983 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1999 0.0000 4 6 3.5739 1.2063 -0.0005 5 6 4.2828 -0.0054 -0.0005 6 6 3.5784 -1.2090 -0.0005 7 6 2.1964 -1.1986 -0.0011 8 6 4.5502 -2.3646 -0.0012 9 1 4.4095 -2.9737 0.8917 10 6 4.3544 -3.2050 -1.2366 11 1 3.5808 -2.9502 -1.9459 12 6 5.1626 -4.2992 -1.4614 13 7 6.1048 -4.6091 -0.5979 14 14 4.9203 -5.3405 -2.9931 15 1 5.1135 -4.4977 -4.2004 16 1 5.9082 -6.4491 -2.9994 17 1 3.5458 -5.9030 -2.9969 18 6 5.9551 -1.7464 -0.0009 19 6 5.7341 -0.2531 -0.0005 20 8 6.6009 0.5948 0.0039 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5135 23 1 -0.3633 -0.8899 -0.5141 24 1 1.6541 2.1336 0.0007 25 1 4.1091 2.1444 -0.0009 26 1 1.6520 -2.1315 -0.0007 27 1 6.6733 -5.3791 -0.7557 28 1 6.5002 -2.0470 -0.8957 29 1 6.5002 -2.0478 0.8935 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161387.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:50 Heat of formation + Delta-G solvation = -42.760545 kcal Electronic energy + Delta-G solvation = -13841.068768 eV Core-core repulsion = 11499.628629 eV Total energy + Delta-G solvation = -2341.440139 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.39283 -39.16354 -36.78297 -34.26344 -32.68664 -30.62957 -28.80855 -27.15798 -24.92138 -23.30258 -21.21169 -20.76510 -18.50051 -17.43284 -16.83295 -16.47204 -16.10554 -15.75355 -14.94071 -14.66413 -14.50784 -14.41277 -14.04702 -13.44266 -13.10368 -12.93738 -12.77533 -12.64023 -12.52009 -12.24739 -12.08889 -11.35310 -11.25575 -10.82186 -10.37135 -9.67825 -9.48395 -8.18714 -6.32049 -0.26400 0.55872 1.43685 1.44600 1.46765 1.52401 2.40534 2.90603 3.11976 3.25313 3.83433 3.98247 4.03530 4.25746 4.48129 4.58318 4.64446 4.68805 4.81107 4.91122 4.94604 5.19576 5.28702 5.30955 5.41094 5.52198 5.64876 5.73144 5.80292 6.06450 6.19068 6.55378 6.75718 7.36733 8.88784 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.010684 C = 0.008230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.414495 B = 2620.116477 C = 3401.315667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.044 4.044 3 C -0.147 4.147 4 C -0.055 4.055 5 C -0.236 4.236 6 C -0.015 4.015 7 C -0.140 4.140 8 C 0.074 3.926 9 H 0.033 0.967 10 C -0.528 4.528 11 H 0.059 0.941 12 C 0.019 3.981 13 N -0.914 5.914 14 Si 0.957 3.043 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.266 1.266 18 C -0.136 4.136 19 C 0.405 3.595 20 O -0.501 6.501 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.163 0.837 25 H 0.134 0.866 26 H 0.128 0.872 27 H 0.266 0.734 28 H 0.083 0.917 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 7.422 0.924 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.044 4.044 3 C -0.165 4.165 4 C -0.074 4.074 5 C -0.237 4.237 6 C -0.016 4.016 7 C -0.158 4.158 8 C 0.055 3.945 9 H 0.050 0.950 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.181 4.181 13 N -0.552 5.552 14 Si 0.782 3.218 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.191 1.191 18 C -0.174 4.174 19 C 0.289 3.711 20 O -0.381 6.381 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.091 0.909 24 H 0.181 0.819 25 H 0.152 0.848 26 H 0.146 0.854 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.119 7.703 0.964 12.754 hybrid contribution 0.623 -1.017 -0.654 1.360 sum -9.496 6.686 0.310 11.618 Atomic orbital electron populations 1.20914 0.87924 1.04191 1.03791 1.20506 0.98114 0.91966 0.93812 1.21202 0.92754 0.99011 1.03501 1.21324 0.94973 0.96160 0.94896 1.21145 0.95285 0.95684 1.11598 1.21206 0.94882 0.95155 0.90313 1.20710 0.92067 0.99088 1.03965 1.18002 0.88062 0.90801 0.97606 0.94951 1.21188 1.17802 1.11044 1.06503 0.92311 1.25724 0.94674 0.98298 0.99418 1.70050 1.20179 1.28008 1.36948 0.85615 0.78306 0.78174 0.79668 1.19967 1.20890 1.19086 1.22182 1.01305 0.91053 1.02825 1.23211 0.88218 0.91789 0.67889 1.90379 1.52310 1.54051 1.41410 0.89267 0.89236 0.90901 0.81912 0.84802 0.85378 0.92539 0.89840 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 10.01 71.24 0.71 -1.29 15 2 C -0.04 -1.20 5.89 -19.81 -0.12 -1.32 15 3 C -0.15 -3.89 9.67 22.18 0.21 -3.67 15 4 C -0.06 -1.83 10.11 22.66 0.23 -1.61 15 5 C -0.24 -9.80 6.11 -20.10 -0.12 -9.92 15 6 C -0.02 -0.65 5.46 -19.49 -0.11 -0.76 15 7 C -0.14 -4.96 9.67 22.27 0.22 -4.75 15 8 C 0.07 3.65 2.88 -12.03 -0.03 3.62 15 9 H 0.03 1.72 8.14 -2.39 -0.02 1.70 15 10 C -0.53 -28.00 8.40 25.60 0.22 -27.79 15 11 H 0.06 3.07 7.76 -2.91 -0.02 3.05 15 12 C 0.02 1.01 5.08 84.65 0.43 1.44 15 13 N -0.91 -50.91 12.34 21.44 0.26 -50.65 15 14 Si 0.96 42.13 29.54 68.60 2.03 44.15 15 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 18 C -0.14 -6.70 5.60 30.09 0.17 -6.53 15 19 C 0.41 18.82 7.77 28.13 0.22 19.03 15 20 O -0.50 -24.39 18.02 -2.96 -0.05 -24.45 15 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.09 1.22 8.08 -2.39 -0.02 1.20 15 23 H 0.07 1.29 8.08 -2.39 -0.02 1.27 15 24 H 0.16 2.92 8.06 -2.91 -0.02 2.90 15 25 H 0.13 3.95 8.06 -2.91 -0.02 3.92 15 26 H 0.13 4.33 8.06 -2.91 -0.02 4.31 15 27 H 0.27 14.12 8.31 -92.70 -0.77 13.35 15 28 H 0.08 4.50 7.20 -2.38 -0.02 4.48 15 29 H 0.08 3.96 8.14 -2.39 -0.02 3.94 15 Total: -1.00 -61.78 255.89 5.40 -56.37 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.14 Total: 8.11 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 2.02 Total: -33.54 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.26 Total: -50.65 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -61.78 5.40 -56.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161387.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.610 kcal (2) G-P(sol) polarization free energy of solvation -61.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds