Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.34933 * 119.66552 * 85.00038 * 11 10 9 13 13 C 1.40482 * 120.42886 * 179.97438 * 12 11 10 14 14 C 1.36064 * 119.58685 * 0.02562 * 13 12 11 15 15 C 1.40795 * 119.23106 * 359.97438 * 14 13 12 16 16 C 1.38920 * 132.96786 * 179.97438 * 15 14 13 17 17 C 1.38546 * 107.57082 * 180.02562 * 16 15 14 18 18 N 1.31480 * 109.00666 * 359.97438 * 17 16 15 19 19 N 1.36537 * 119.67141 * 264.72785 * 11 10 9 20 20 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.07992 * 119.79052 * 0.02562 * 12 11 10 26 26 H 1.07995 * 120.20557 * 179.97438 * 13 12 11 27 27 H 1.08006 * 120.38285 * 179.97438 * 14 13 12 28 28 H 1.08004 * 126.21984 * 0.07645 * 16 15 14 29 29 H 1.08005 * 125.50032 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5287 -2.6364 0.0022 12 6 6.1965 -2.5333 1.1701 13 6 7.6012 -2.5321 1.1888 14 6 8.2887 -2.6354 0.0191 15 6 7.5758 -2.7422 -1.1903 16 6 7.9729 -2.8588 -2.5164 17 6 6.8268 -2.9270 -3.2918 18 7 5.7742 -2.8586 -2.5070 19 7 6.2045 -2.7464 -1.1790 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6587 -3.1509 -0.8875 24 1 3.6580 -3.1497 0.8925 25 1 5.6477 -2.4519 2.0967 26 1 8.1321 -2.4489 2.1255 27 1 9.3688 -2.6354 0.0185 28 1 8.9903 -2.8914 -2.8774 29 1 6.8020 -3.0212 -4.3674 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261204623.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = 92.056184 kcal Electronic energy + Delta-G solvation = -13671.211536 eV Core-core repulsion = 11367.910240 eV Total energy + Delta-G solvation = -2303.301296 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75033 -37.28466 -34.47415 -32.66487 -31.10029 -30.06538 -28.13999 -25.64246 -22.93155 -22.45037 -21.24122 -19.90016 -17.15484 -16.83887 -16.27676 -15.46900 -15.33642 -14.27702 -14.07300 -13.81211 -13.09838 -12.87794 -12.69751 -12.01533 -11.86726 -11.73961 -11.32476 -11.04550 -10.58893 -10.33055 -10.11044 -9.83133 -9.72158 -9.27928 -9.09322 -8.57702 -7.31427 -6.08343 -4.07345 1.00886 1.35944 2.52467 2.97477 3.29398 3.36320 3.39744 3.59637 4.42025 4.49726 4.75217 4.96429 5.14664 5.18081 5.25668 5.58195 5.68060 5.82726 5.96628 5.99789 6.22973 6.27471 6.34414 6.54812 6.66172 6.82799 7.13177 7.15406 7.34986 7.69801 7.84477 8.46769 8.95046 9.53251 11.04793 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.008096 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.650809 B = 3457.586409 C = 3687.035451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.073 4.073 11 C 0.171 3.829 12 C -0.186 4.186 13 C -0.068 4.068 14 C -0.144 4.144 15 C 0.105 3.895 16 C -0.303 4.303 17 C 0.069 3.931 18 N -0.309 5.309 19 N -0.268 5.268 20 H 0.264 0.736 21 H 0.020 0.980 22 H 0.013 0.987 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.154 0.846 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.026 -4.976 0.337 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.093 0.907 9 C -0.039 4.039 10 C -0.111 4.111 11 C 0.064 3.936 12 C -0.208 4.208 13 C -0.091 4.091 14 C -0.164 4.164 15 C -0.014 4.014 16 C -0.332 4.332 17 C -0.108 4.108 18 N -0.131 5.131 19 N -0.035 5.035 20 H 0.074 0.926 21 H 0.038 0.962 22 H 0.032 0.968 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.171 0.829 26 H 0.155 0.845 27 H 0.159 0.841 28 H 0.167 0.833 29 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 15.520 -4.874 0.234 16.269 hybrid contribution 1.334 0.985 -0.147 1.665 sum 16.855 -3.890 0.087 17.298 Atomic orbital electron populations 1.69900 1.06226 1.26980 1.50776 1.24966 0.94707 0.99043 0.94386 0.86819 0.80329 0.83757 0.78671 1.20233 1.21175 1.19082 1.21022 0.88824 0.94725 1.51337 0.90704 1.19537 0.97527 0.90139 0.96723 1.20869 0.84146 1.02054 1.03993 1.20896 0.96865 0.94217 0.81575 1.20663 0.94392 1.08591 0.97112 1.21156 0.93938 0.95691 0.98310 1.20447 1.00142 1.06180 0.89600 1.19694 0.84051 1.01504 0.96167 1.21204 0.99782 1.22455 0.89792 1.23768 0.90086 0.96788 1.00185 1.78006 1.21865 1.29600 0.83665 1.46322 1.05230 1.45885 1.06099 0.92612 0.96186 0.96823 0.89942 0.89435 0.82857 0.84533 0.84129 0.83341 0.79568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 15 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 15 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 15 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 15 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 15 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 15 9 C 0.00 -0.04 4.02 -27.89 -0.11 -0.15 15 10 C -0.07 -1.48 5.31 -27.88 -0.15 -1.63 15 11 C 0.17 3.12 6.07 -81.67 -0.50 2.62 15 12 C -0.19 -2.75 9.60 -39.91 -0.38 -3.13 15 13 C -0.07 -0.83 10.07 -39.52 -0.40 -1.23 15 14 C -0.14 -1.85 10.11 -39.40 -0.40 -2.24 15 15 C 0.10 1.68 6.81 -84.28 -0.57 1.10 15 16 C -0.30 -4.35 10.92 -39.22 -0.43 -4.78 15 17 C 0.07 1.06 11.94 -17.59 -0.21 0.85 15 18 N -0.31 -5.97 12.32 30.46 0.38 -5.60 15 19 N -0.27 -5.03 3.90 -7.01 -0.03 -5.06 15 20 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 21 H 0.02 0.47 7.20 -51.93 -0.37 0.10 15 22 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 15 23 H 0.08 1.79 7.94 -51.93 -0.41 1.38 15 24 H 0.09 1.62 8.10 -51.93 -0.42 1.20 15 25 H 0.15 1.95 8.06 -52.49 -0.42 1.53 15 26 H 0.14 1.16 8.06 -52.49 -0.42 0.74 15 27 H 0.14 1.33 8.06 -52.48 -0.42 0.90 15 28 H 0.15 1.65 8.06 -52.48 -0.42 1.22 15 29 H 0.19 2.06 8.06 -52.48 -0.42 1.64 15 LS Contribution 255.78 15.07 3.85 3.85 Total: -1.00 -33.23 255.78 -6.57 -39.80 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -3.30 Total: -1.48 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.58 Total: -21.89 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 1.12 Total: -37.74 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.23 -6.57 -39.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261204623.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.859 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds