Wall clock time and date at job start Mon Mar 30 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.34933 * 119.66552 * 85.00038 * 11 10 9 13 13 C 1.40482 * 120.42886 * 179.97438 * 12 11 10 14 14 C 1.36064 * 119.58685 * 0.02562 * 13 12 11 15 15 C 1.40795 * 119.23106 * 359.97438 * 14 13 12 16 16 C 1.38920 * 132.96786 * 179.97438 * 15 14 13 17 17 C 1.38546 * 107.57082 * 180.02562 * 16 15 14 18 18 N 1.31480 * 109.00666 * 359.97438 * 17 16 15 19 19 N 1.36537 * 119.67141 * 264.72785 * 11 10 9 20 20 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.07992 * 119.79052 * 0.02562 * 12 11 10 26 26 H 1.07995 * 120.20557 * 179.97438 * 13 12 11 27 27 H 1.08006 * 120.38285 * 179.97438 * 14 13 12 28 28 H 1.08004 * 126.21984 * 0.07645 * 16 15 14 29 29 H 1.08005 * 125.50032 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5287 -2.6364 0.0022 12 6 6.1965 -2.5333 1.1701 13 6 7.6012 -2.5321 1.1888 14 6 8.2887 -2.6354 0.0191 15 6 7.5758 -2.7422 -1.1903 16 6 7.9729 -2.8588 -2.5164 17 6 6.8268 -2.9270 -3.2918 18 7 5.7742 -2.8586 -2.5070 19 7 6.2045 -2.7464 -1.1790 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6587 -3.1509 -0.8875 24 1 3.6580 -3.1497 0.8925 25 1 5.6477 -2.4519 2.0967 26 1 8.1321 -2.4489 2.1255 27 1 9.3688 -2.6354 0.0185 28 1 8.9903 -2.8914 -2.8774 29 1 6.8020 -3.0212 -4.3674 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261204623.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:37 Heat of formation + Delta-G solvation = 70.859942 kcal Electronic energy + Delta-G solvation = -13672.130674 eV Core-core repulsion = 11367.910240 eV Total energy + Delta-G solvation = -2304.220434 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.90437 -38.47774 -36.08659 -34.48053 -32.63889 -31.39164 -29.45616 -27.33050 -24.26978 -23.59599 -22.88184 -21.30790 -19.09915 -18.19082 -17.44814 -16.70455 -16.45572 -16.24413 -15.42482 -15.15618 -14.77620 -14.64281 -14.00351 -13.63258 -13.12380 -13.01872 -12.91580 -12.58343 -12.09317 -11.97588 -11.83424 -11.59158 -11.34936 -11.15908 -10.83976 -10.28682 -8.45637 -8.35624 -6.40512 -0.09009 0.24423 1.29653 1.30553 1.37895 1.42368 1.83758 2.29411 2.51673 2.99107 3.29105 3.78654 3.83908 4.08491 4.22791 4.29511 4.47040 4.57064 4.65222 4.81066 4.87213 4.93750 5.16698 5.22820 5.29492 5.36360 5.54162 5.64356 5.74874 6.06222 6.19027 6.64883 6.67558 7.23911 8.80949 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.008096 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.650809 B = 3457.586409 C = 3687.035451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.247 1.247 7 C -0.533 4.533 8 H 0.037 0.963 9 C 0.009 3.991 10 C -0.060 4.060 11 C 0.120 3.880 12 C -0.164 4.164 13 C -0.068 4.068 14 C -0.130 4.130 15 C 0.081 3.919 16 C -0.299 4.299 17 C 0.063 3.937 18 N -0.375 5.375 19 N -0.285 5.285 20 H 0.269 0.731 21 H 0.033 0.967 22 H -0.004 1.004 23 H 0.053 0.947 24 H 0.098 0.902 25 H 0.173 0.827 26 H 0.184 0.816 27 H 0.183 0.817 28 H 0.184 0.816 29 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.777 -4.175 1.499 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.056 0.944 9 C -0.029 4.029 10 C -0.098 4.098 11 C 0.014 3.986 12 C -0.185 4.185 13 C -0.090 4.090 14 C -0.149 4.149 15 C -0.038 4.038 16 C -0.328 4.328 17 C -0.113 4.113 18 N -0.199 5.199 19 N -0.053 5.053 20 H 0.078 0.922 21 H 0.051 0.949 22 H 0.015 0.985 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.190 0.810 26 H 0.202 0.798 27 H 0.200 0.800 28 H 0.201 0.799 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 19.284 -4.090 1.399 19.763 hybrid contribution 0.219 0.633 -0.510 0.841 sum 19.503 -3.457 0.889 19.827 Atomic orbital electron populations 1.70042 1.08085 1.28294 1.52157 1.25906 0.95583 1.03175 0.93931 0.85736 0.79722 0.78814 0.78859 1.20232 1.19903 1.17028 1.21352 0.91358 0.93480 1.50914 0.94433 1.19360 0.94398 0.92991 0.96156 1.20496 0.86981 0.99169 1.03124 1.20667 0.95446 0.99454 0.83010 1.21115 0.96146 1.04945 0.96334 1.21635 0.92573 0.94613 1.00202 1.21049 1.02087 1.03459 0.88350 1.20466 0.83256 1.01950 0.98157 1.21688 1.00955 1.21030 0.89110 1.24381 0.89766 0.95624 1.01530 1.77911 1.24531 1.32490 0.84941 1.46386 1.06407 1.46694 1.05781 0.92249 0.94892 0.98528 0.92842 0.88386 0.81007 0.79826 0.80020 0.79890 0.76544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.96 21.45 0.30 -59.95 15 2 C 0.01 0.70 5.47 84.65 0.46 1.16 15 3 Si 0.95 45.77 27.47 68.60 1.88 47.65 15 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 15 5 H -0.27 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.25 -11.08 6.54 99.48 0.65 -10.43 15 7 C -0.53 -31.76 9.66 25.60 0.25 -31.51 15 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 15 9 C 0.01 0.43 4.02 29.85 0.12 0.55 15 10 C -0.06 -2.53 5.31 29.85 0.16 -2.37 15 11 C 0.12 4.33 6.07 41.07 0.25 4.58 15 12 C -0.16 -4.38 9.60 22.06 0.21 -4.17 15 13 C -0.07 -1.32 10.07 22.31 0.22 -1.10 15 14 C -0.13 -2.74 10.11 22.39 0.23 -2.51 15 15 C 0.08 2.39 6.81 39.10 0.27 2.65 15 16 C -0.30 -7.85 10.92 22.51 0.25 -7.60 15 17 C 0.06 1.87 11.94 84.82 1.01 2.88 15 18 N -0.37 -14.86 12.32 -57.54 -0.71 -15.57 15 19 N -0.28 -10.62 3.90 -176.10 -0.69 -11.30 15 20 H 0.27 15.88 8.31 -92.71 -0.77 15.11 15 21 H 0.03 1.53 7.20 -2.39 -0.02 1.52 15 22 H 0.00 -0.19 7.57 -2.39 -0.02 -0.21 15 23 H 0.05 2.50 7.94 -2.39 -0.02 2.48 15 24 H 0.10 3.76 8.10 -2.39 -0.02 3.74 15 25 H 0.17 3.80 8.06 -2.91 -0.02 3.78 15 26 H 0.18 1.87 8.06 -2.91 -0.02 1.84 15 27 H 0.18 2.26 8.06 -2.91 -0.02 2.23 15 28 H 0.18 3.31 8.06 -2.91 -0.02 3.29 15 29 H 0.22 4.56 8.06 -2.91 -0.02 4.54 15 Total: -1.00 -76.17 255.78 5.29 -70.87 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.08 Total: 5.75 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 3.43 Total: -37.44 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -1.10 Total: -86.83 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.65 kcal Total: -76.17 5.29 -70.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261204623.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.733 kcal (2) G-P(sol) polarization free energy of solvation -76.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds