Wall clock time and date at job start Mon Mar 30 2020 03:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.50696 * 109.46969 * 179.97438 * 10 9 7 12 12 C 1.36058 * 120.39192 * 264.72526 * 11 10 9 13 13 C 1.40471 * 119.59231 * 179.79605 * 12 11 10 14 14 C 1.34933 * 120.43210 * 0.44608 * 13 12 11 15 15 N 1.36533 * 120.65953 * 359.80808 * 14 13 12 16 16 N 1.40038 * 132.43583 * 179.97438 * 15 14 13 17 17 C 1.31482 * 108.91627 * 180.02562 * 16 15 14 18 18 C 1.38540 * 109.01082 * 0.02562 * 17 16 15 19 19 C 1.37134 * 120.12081 * 359.97438 * 15 14 13 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 24 24 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 25 25 H 1.08001 * 120.20349 * 359.97438 * 12 11 10 26 26 H 1.08004 * 119.78625 * 180.25603 * 13 12 11 27 27 H 1.08002 * 119.67236 * 179.79346 * 14 13 12 28 28 H 1.08000 * 125.49283 * 179.97438 * 17 16 15 29 29 H 1.07999 * 126.21891 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4916 -4.9672 -0.0075 12 6 1.2465 -5.6199 1.1609 13 6 0.5388 -6.8332 1.1424 14 6 0.1103 -7.3568 -0.0251 15 7 0.3531 -6.7162 -1.2061 16 7 0.0310 -7.0267 -2.5331 17 6 0.4946 -6.0787 -3.3173 18 6 1.1309 -5.1228 -2.5422 19 6 1.0378 -5.5281 -1.2166 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.8677 -3.6020 -0.9008 24 1 2.8758 -3.6067 0.8792 25 1 1.5915 -5.2064 2.0970 26 1 0.3389 -7.3519 2.0684 27 1 -0.4298 -8.2920 -0.0254 28 1 0.3960 -6.0502 -4.3924 29 1 1.6107 -4.2250 -2.9028 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261222172.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:59 Heat of formation + Delta-G solvation = 88.283713 kcal Electronic energy + Delta-G solvation = -13598.708928 eV Core-core repulsion = 11295.244045 eV Total energy + Delta-G solvation = -2303.464883 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.63195 -37.10325 -34.62156 -32.64137 -30.61766 -29.73779 -27.97080 -25.30240 -22.83306 -22.38727 -21.29861 -19.92638 -17.07723 -16.50711 -16.12150 -15.46535 -15.20601 -14.47817 -13.80853 -13.65823 -12.89863 -12.80441 -12.42170 -11.76026 -11.69063 -11.50073 -11.08498 -10.96294 -10.66509 -10.40021 -10.08119 -9.87589 -9.31940 -9.10392 -9.00507 -8.37377 -7.14725 -6.01654 -4.05147 1.14118 1.42963 2.59029 3.05340 3.30216 3.37924 3.41594 3.75725 4.44164 4.54746 4.96008 5.04137 5.15767 5.34216 5.35470 5.71086 5.81818 5.96928 6.09061 6.30748 6.37097 6.54197 6.68556 6.77686 6.94120 7.01239 7.20852 7.64904 7.76792 7.87720 7.97382 8.36797 9.01885 9.59244 11.09375 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.041598 B = 0.007150 C = 0.006542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.947436 B = 3914.888107 C = 4279.209723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.072 4.072 11 C -0.042 4.042 12 C -0.114 4.114 13 C -0.147 4.147 14 C 0.078 3.922 15 N -0.273 5.273 16 N -0.336 5.336 17 C 0.067 3.933 18 C -0.274 4.274 19 C 0.111 3.889 20 H 0.260 0.740 21 H 0.017 0.983 22 H 0.020 0.980 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.138 0.862 26 H 0.149 0.851 27 H 0.160 0.840 28 H 0.187 0.813 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -12.193 0.026 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.110 4.110 11 C -0.044 4.044 12 C -0.136 4.136 13 C -0.169 4.169 14 C -0.046 4.046 15 N -0.040 5.040 16 N -0.161 5.161 17 C -0.108 4.108 18 C -0.303 4.303 19 C -0.009 4.009 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.156 0.844 26 H 0.166 0.834 27 H 0.177 0.823 28 H 0.204 0.796 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.063 -13.237 -0.091 13.279 hybrid contribution 0.673 1.709 -0.019 1.836 sum 1.735 -11.528 -0.111 11.658 Atomic orbital electron populations 1.69985 1.06090 1.26552 1.50639 1.25016 0.94815 0.99258 0.95247 0.86537 0.80122 0.83772 0.77596 1.19671 1.20996 1.21031 1.21253 0.93090 0.90790 1.50855 0.92438 1.19084 0.93622 0.90278 0.97725 1.20795 0.98290 0.89978 1.01951 1.19915 0.97595 0.97291 0.89549 1.21030 0.99398 0.94698 0.98513 1.20782 1.01613 0.97791 0.96734 1.21248 1.02481 0.99059 0.81842 1.46191 1.35986 1.15777 1.06048 1.77737 1.29187 1.25344 0.83873 1.23670 0.95398 0.91709 1.00013 1.21422 1.14185 1.04824 0.89867 1.19569 0.97263 0.87913 0.96127 0.93009 0.96483 0.96120 0.91551 0.91488 0.84406 0.83379 0.82283 0.79579 0.82584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.04 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 9 C 0.03 0.76 4.96 -27.88 -0.14 0.62 15 10 C -0.07 -1.46 5.18 -27.89 -0.14 -1.60 15 11 C -0.04 -0.76 5.15 -104.44 -0.54 -1.30 15 12 C -0.11 -1.74 9.71 -39.52 -0.38 -2.13 15 13 C -0.15 -1.88 9.98 -39.91 -0.40 -2.28 15 14 C 0.08 1.10 11.19 -16.63 -0.19 0.91 15 15 N -0.27 -4.80 3.90 -10.70 -0.04 -4.84 15 16 N -0.34 -5.93 12.66 30.46 0.39 -5.55 15 17 C 0.07 1.08 11.94 -17.59 -0.21 0.87 15 18 C -0.27 -4.91 10.57 -39.21 -0.41 -5.33 15 19 C 0.11 2.08 6.67 -84.27 -0.56 1.52 15 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.07 1.31 7.99 -51.93 -0.41 0.90 15 24 H 0.07 1.26 8.05 -51.93 -0.42 0.84 15 25 H 0.14 1.86 8.06 -52.49 -0.42 1.43 15 26 H 0.15 1.29 8.06 -52.48 -0.42 0.87 15 27 H 0.16 1.69 8.06 -52.49 -0.42 1.27 15 28 H 0.19 2.19 8.06 -52.49 -0.42 1.77 15 29 H 0.16 2.70 8.06 -52.49 -0.42 2.28 15 LS Contribution 259.28 15.07 3.91 3.91 Total: -1.00 -32.31 259.28 -6.75 -39.07 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.33 Total: -0.97 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -3.39 Total: -21.93 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 1.08 Total: -36.43 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.31 -6.75 -39.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222172.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.353 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds