Wall clock time and date at job start Mon Mar 30 2020 03:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.50696 * 109.46969 * 179.97438 * 10 9 7 12 12 C 1.36058 * 120.39192 * 264.72526 * 11 10 9 13 13 C 1.40471 * 119.59231 * 179.79605 * 12 11 10 14 14 C 1.34933 * 120.43210 * 0.44608 * 13 12 11 15 15 N 1.36533 * 120.65953 * 359.80808 * 14 13 12 16 16 N 1.40038 * 132.43583 * 179.97438 * 15 14 13 17 17 C 1.31482 * 108.91627 * 180.02562 * 16 15 14 18 18 C 1.38540 * 109.01082 * 0.02562 * 17 16 15 19 19 C 1.37134 * 120.12081 * 359.97438 * 15 14 13 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 24 24 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 25 25 H 1.08001 * 120.20349 * 359.97438 * 12 11 10 26 26 H 1.08004 * 119.78625 * 180.25603 * 13 12 11 27 27 H 1.08002 * 119.67236 * 179.79346 * 14 13 12 28 28 H 1.08000 * 125.49283 * 179.97438 * 17 16 15 29 29 H 1.07999 * 126.21891 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4916 -4.9672 -0.0075 12 6 1.2465 -5.6199 1.1609 13 6 0.5388 -6.8332 1.1424 14 6 0.1103 -7.3568 -0.0251 15 7 0.3531 -6.7162 -1.2061 16 7 0.0310 -7.0267 -2.5331 17 6 0.4946 -6.0787 -3.3173 18 6 1.1309 -5.1228 -2.5422 19 6 1.0378 -5.5281 -1.2166 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.8677 -3.6020 -0.9008 24 1 2.8758 -3.6067 0.8792 25 1 1.5915 -5.2064 2.0970 26 1 0.3389 -7.3519 2.0684 27 1 -0.4298 -8.2920 -0.0254 28 1 0.3960 -6.0502 -4.3924 29 1 1.6107 -4.2250 -2.9028 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222172.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:59 Heat of formation + Delta-G solvation = 69.043626 kcal Electronic energy + Delta-G solvation = -13599.543241 eV Core-core repulsion = 11295.244045 eV Total energy + Delta-G solvation = -2304.299196 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.89153 -38.36547 -36.24722 -34.52014 -32.02204 -31.28142 -29.35677 -27.09019 -24.35670 -23.64106 -22.89572 -21.38290 -18.56145 -18.31281 -17.46755 -16.61061 -16.56723 -16.38716 -15.20420 -14.98460 -14.64029 -14.36658 -13.95113 -13.43526 -13.08016 -12.92516 -12.82107 -12.52730 -12.34126 -11.97440 -11.69848 -11.63520 -11.21297 -10.89495 -10.55759 -10.24461 -8.44287 -8.17878 -6.30450 -0.08699 0.19264 1.40649 1.41866 1.42545 1.55715 1.79954 2.41316 2.51259 3.15029 3.36837 3.72511 3.96089 4.03306 4.09370 4.52034 4.62568 4.68914 4.77732 4.83432 4.95631 5.08712 5.18904 5.39863 5.49629 5.55300 5.65599 5.77399 5.84612 5.99312 6.23010 6.61466 6.86782 7.39329 8.93349 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.041598 B = 0.007150 C = 0.006542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.947436 B = 3914.888107 C = 4279.209723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.039 3.961 10 C -0.055 4.055 11 C -0.087 4.087 12 C -0.094 4.094 13 C -0.139 4.139 14 C 0.073 3.927 15 N -0.283 5.283 16 N -0.357 5.357 17 C 0.075 3.925 18 C -0.309 4.309 19 C 0.092 3.908 20 H 0.263 0.737 21 H -0.008 1.008 22 H -0.015 1.015 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.158 0.842 26 H 0.199 0.801 27 H 0.197 0.803 28 H 0.223 0.777 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -13.220 1.104 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.002 3.998 10 C -0.093 4.093 11 C -0.089 4.089 12 C -0.117 4.117 13 C -0.160 4.160 14 C -0.050 4.050 15 N -0.050 5.050 16 N -0.182 5.182 17 C -0.099 4.099 18 C -0.339 4.339 19 C -0.028 4.028 20 H 0.071 0.929 21 H 0.010 0.990 22 H 0.003 0.997 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.176 0.824 26 H 0.216 0.784 27 H 0.213 0.787 28 H 0.239 0.761 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.637 -14.282 0.987 14.409 hybrid contribution 0.448 1.929 -0.276 2.000 sum 2.085 -12.353 0.711 12.548 Atomic orbital electron populations 1.70126 1.07958 1.27665 1.51814 1.25978 0.95670 1.03390 0.94706 0.85390 0.79236 0.78717 0.77657 1.18247 1.20680 1.20387 1.21713 0.93704 0.91963 1.50341 0.91647 1.18882 0.93930 0.92289 0.94687 1.20446 0.97114 0.89392 1.02321 1.19762 1.00628 0.97631 0.90861 1.21492 0.97209 0.94913 0.98094 1.21334 0.99807 0.96579 0.98303 1.22155 1.01807 1.00026 0.81060 1.46509 1.35922 1.15620 1.06941 1.77664 1.30137 1.26096 0.84257 1.24202 0.93785 0.90406 1.01531 1.21554 1.16097 1.05620 0.90584 1.19768 0.97683 0.88770 0.96534 0.92858 0.98986 0.99678 0.92041 0.90123 0.82410 0.78372 0.78656 0.76053 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.29 21.45 0.28 -57.14 15 2 C 0.00 0.01 5.46 84.65 0.46 0.47 15 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 15 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.28 -12.34 7.11 99.48 0.71 -11.64 15 7 C -0.54 -30.41 9.11 25.60 0.23 -30.18 15 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 15 9 C 0.04 2.08 4.96 29.85 0.15 2.23 15 10 C -0.05 -2.26 5.18 29.85 0.15 -2.11 15 11 C -0.09 -3.19 5.15 -19.75 -0.10 -3.29 15 12 C -0.09 -2.69 9.71 22.31 0.22 -2.47 15 13 C -0.14 -3.02 9.98 22.05 0.22 -2.80 15 14 C 0.07 1.84 11.19 83.20 0.93 2.77 15 15 N -0.28 -9.67 3.90 -187.78 -0.73 -10.41 15 16 N -0.36 -12.32 12.66 -57.55 -0.73 -13.05 15 17 C 0.08 2.42 11.94 84.82 1.01 3.43 15 18 C -0.31 -11.53 10.57 22.51 0.24 -11.29 15 19 C 0.09 3.51 6.67 39.11 0.26 3.77 15 20 H 0.26 15.12 8.31 -92.71 -0.77 14.35 15 21 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15 22 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 15 23 H 0.06 2.53 7.99 -2.39 -0.02 2.51 15 24 H 0.08 3.02 8.05 -2.39 -0.02 3.00 15 25 H 0.16 3.79 8.06 -2.91 -0.02 3.77 15 26 H 0.20 2.29 8.06 -2.91 -0.02 2.27 15 27 H 0.20 3.34 8.06 -2.91 -0.02 3.32 15 28 H 0.22 5.00 8.06 -2.91 -0.02 4.98 15 29 H 0.15 5.52 8.06 -2.91 -0.02 5.49 15 Total: -1.00 -72.00 259.28 5.76 -66.24 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.13 Total: 7.78 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 3.78 Total: -39.48 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -1.18 Total: -80.60 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.00 5.76 -66.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222172.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.287 kcal (2) G-P(sol) polarization free energy of solvation -72.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds