Wall clock time and date at job start Mon Mar 30 2020 02:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.38744 * 119.65535 * 269.72826 * 11 10 9 13 13 C 1.36739 * 120.41420 * 179.77889 * 12 11 10 14 14 C 1.39403 * 119.71751 * 0.46414 * 13 12 11 15 15 C 1.46784 * 134.37103 * 179.77932 * 14 13 12 16 16 C 1.33987 * 106.18859 * 180.02562 * 15 14 13 17 17 O 1.34453 * 110.15294 * 0.02562 * 16 15 14 18 18 C 1.34810 * 110.89044 * 0.02562 * 17 16 15 19 19 C 1.37843 * 119.65797 * 89.99468 * 11 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 24 24 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 25 25 H 1.08005 * 119.78829 * 359.97438 * 12 11 10 26 26 H 1.08004 * 120.13832 * 180.25698 * 13 12 11 27 27 H 1.08000 * 126.90234 * 359.97438 * 15 14 13 28 28 H 1.07998 * 124.92694 * 179.97438 * 16 15 14 29 29 H 1.07998 * 120.09383 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 6 1.1536 -5.5696 1.1876 13 6 0.4661 -6.7515 1.2010 14 6 0.1118 -7.3586 -0.0029 15 6 -0.6008 -8.5911 -0.3603 16 6 -0.6280 -8.6319 -1.6993 17 8 -0.0063 -7.5539 -2.2084 18 6 0.4574 -6.7572 -1.2247 19 6 1.1502 -5.5529 -1.2159 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8718 -3.6005 -0.9002 24 1 2.8717 -3.6084 0.8798 25 1 1.4326 -5.1004 2.1195 26 1 0.2017 -7.2145 2.1403 27 1 -1.0184 -9.3191 0.3194 28 1 -1.0826 -9.4173 -2.2848 29 1 1.4222 -5.0780 -2.1469 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261222453.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:44 Heat of formation + Delta-G solvation = 10.341433 kcal Electronic energy + Delta-G solvation = -13311.257643 eV Core-core repulsion = 10972.120178 eV Total energy + Delta-G solvation = -2339.137465 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.16109 -37.98827 -33.99167 -32.59703 -31.14388 -30.10479 -28.21850 -24.96283 -22.98117 -21.86673 -21.12864 -19.99642 -17.18694 -16.77621 -16.24727 -15.84169 -14.97626 -14.46686 -14.11885 -13.61723 -12.85551 -12.66955 -12.47639 -12.26997 -11.89359 -11.58390 -11.03187 -10.93296 -10.72604 -10.49912 -9.99043 -9.84835 -9.46674 -9.11220 -8.36334 -8.24911 -7.76850 -6.00079 -4.03430 1.22906 1.72103 2.56710 3.01136 3.32162 3.38438 3.41568 4.06695 4.45952 4.65386 4.90120 5.25450 5.35523 5.40560 5.46104 5.60963 5.78720 5.86532 6.13384 6.27305 6.49104 6.59696 6.62607 6.69869 6.86944 7.01738 7.08489 7.45379 7.67101 7.79993 7.99389 8.39191 9.03511 9.60652 11.10934 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.061056 B = 0.005663 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.482395 B = 4942.932200 C = 5068.724680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.079 4.079 11 C -0.027 4.027 12 C -0.130 4.130 13 C -0.074 4.074 14 C -0.153 4.153 15 C -0.209 4.209 16 C -0.008 4.008 17 O -0.199 6.199 18 C 0.055 3.945 19 C -0.114 4.114 20 H 0.261 0.739 21 H 0.019 0.981 22 H 0.018 0.982 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.129 0.871 26 H 0.122 0.878 27 H 0.152 0.848 28 H 0.202 0.798 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -15.441 -0.396 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.117 4.117 11 C -0.027 4.027 12 C -0.148 4.148 13 C -0.092 4.092 14 C -0.154 4.154 15 C -0.228 4.228 16 C -0.073 4.073 17 O -0.101 6.101 18 C 0.008 3.992 19 C -0.133 4.133 20 H 0.070 0.930 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.147 0.853 26 H 0.140 0.860 27 H 0.170 0.830 28 H 0.219 0.781 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.103 -15.254 -0.669 15.269 hybrid contribution 0.175 0.770 0.121 0.799 sum 0.072 -14.484 -0.548 14.494 Atomic orbital electron populations 1.69976 1.06072 1.26643 1.50593 1.25030 0.94846 0.99274 0.95281 0.86584 0.79826 0.83416 0.78113 1.20654 1.21233 1.19839 1.21246 0.93077 0.90900 1.50907 0.92510 1.19096 0.93664 0.90359 0.97716 1.20885 0.98377 0.90649 1.01759 1.20168 0.95419 0.95864 0.91238 1.20778 1.00242 0.95435 0.98337 1.20197 0.97828 0.95315 0.95891 1.19868 1.04470 0.96812 0.94231 1.22448 1.06052 0.98956 0.95364 1.23816 0.99007 0.90333 0.94115 1.83978 1.60894 1.29981 1.35241 1.19667 0.99946 0.94021 0.85540 1.19844 1.01825 0.92205 0.99401 0.92958 0.96277 0.96316 0.91871 0.91683 0.85319 0.86037 0.82997 0.78118 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.29 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 15 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.03 0.74 4.96 -27.88 -0.14 0.60 15 10 C -0.08 -1.63 5.26 -27.89 -0.15 -1.78 15 11 C -0.03 -0.50 5.13 -104.58 -0.54 -1.04 15 12 C -0.13 -2.20 9.62 -39.94 -0.38 -2.58 15 13 C -0.07 -1.15 10.05 -39.69 -0.40 -1.55 15 14 C -0.15 -2.47 6.40 -105.16 -0.67 -3.14 15 15 C -0.21 -2.66 11.14 -37.62 -0.42 -3.08 15 16 C -0.01 -0.09 11.96 29.24 0.35 0.26 15 17 O -0.20 -3.13 10.58 3.89 0.04 -3.09 15 18 C 0.06 0.96 7.42 -38.47 -0.29 0.68 15 19 C -0.11 -2.08 9.70 -39.47 -0.38 -2.46 15 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 21 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.02 0.52 8.14 -51.93 -0.42 0.09 15 23 H 0.06 1.25 8.08 -51.93 -0.42 0.83 15 24 H 0.06 1.27 8.08 -51.93 -0.42 0.85 15 25 H 0.13 1.98 8.06 -52.48 -0.42 1.56 15 26 H 0.12 1.52 8.06 -52.48 -0.42 1.10 15 27 H 0.15 1.46 8.06 -52.49 -0.42 1.04 15 28 H 0.20 1.39 8.06 -52.49 -0.42 0.97 15 29 H 0.13 2.25 8.06 -52.49 -0.42 1.82 15 LS Contribution 259.71 15.07 3.91 3.91 Total: -1.00 -31.62 259.71 -7.10 -38.71 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -3.34 Total: -2.25 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -3.43 Total: -27.59 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.62 -7.10 -38.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222453.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.056 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds