Wall clock time and date at job start Mon Mar 30 2020 02:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.38744 * 119.65535 * 269.72826 * 11 10 9 13 13 C 1.36739 * 120.41420 * 179.77889 * 12 11 10 14 14 C 1.39403 * 119.71751 * 0.46414 * 13 12 11 15 15 C 1.46784 * 134.37103 * 179.77932 * 14 13 12 16 16 C 1.33987 * 106.18859 * 180.02562 * 15 14 13 17 17 O 1.34453 * 110.15294 * 0.02562 * 16 15 14 18 18 C 1.34810 * 110.89044 * 0.02562 * 17 16 15 19 19 C 1.37843 * 119.65797 * 89.99468 * 11 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 24 24 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 25 25 H 1.08005 * 119.78829 * 359.97438 * 12 11 10 26 26 H 1.08004 * 120.13832 * 180.25698 * 13 12 11 27 27 H 1.08000 * 126.90234 * 359.97438 * 15 14 13 28 28 H 1.07998 * 124.92694 * 179.97438 * 16 15 14 29 29 H 1.07998 * 120.09383 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 6 1.1536 -5.5696 1.1876 13 6 0.4661 -6.7515 1.2010 14 6 0.1118 -7.3586 -0.0029 15 6 -0.6008 -8.5911 -0.3603 16 6 -0.6280 -8.6319 -1.6993 17 8 -0.0063 -7.5539 -2.2084 18 6 0.4574 -6.7572 -1.2247 19 6 1.1502 -5.5529 -1.2159 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8718 -3.6005 -0.9002 24 1 2.8717 -3.6084 0.8798 25 1 1.4326 -5.1004 2.1195 26 1 0.2017 -7.2145 2.1403 27 1 -1.0184 -9.3191 0.3194 28 1 -1.0826 -9.4173 -2.2848 29 1 1.4222 -5.0780 -2.1469 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222453.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:44 Heat of formation + Delta-G solvation = -7.562321 kcal Electronic energy + Delta-G solvation = -13312.034008 eV Core-core repulsion = 10972.120178 eV Total energy + Delta-G solvation = -2339.913830 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.31096 -39.31998 -35.82344 -34.19348 -32.67677 -31.36587 -29.80758 -26.77996 -24.28407 -23.56455 -22.29063 -21.47881 -18.59124 -18.30571 -17.85575 -17.02073 -16.52954 -16.27133 -15.40579 -14.90619 -14.52948 -14.25807 -13.96674 -13.68657 -13.45618 -13.01967 -12.82905 -12.64480 -12.43720 -12.00290 -11.73722 -11.59468 -11.21268 -10.91571 -10.56102 -9.54383 -9.01326 -8.19576 -6.31900 0.01729 0.41482 1.40981 1.42544 1.50078 1.53930 1.91626 2.41378 2.76218 3.13338 3.60151 3.79411 4.01816 4.14432 4.30796 4.41210 4.58239 4.65043 4.82115 4.84161 4.92228 5.15752 5.24862 5.37149 5.49456 5.51950 5.57564 5.72471 5.82872 5.84251 6.21669 6.25623 6.85060 7.37594 8.92066 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.061056 B = 0.005663 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.482395 B = 4942.932200 C = 5068.724680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.035 3.965 10 C -0.064 4.064 11 C -0.051 4.051 12 C -0.141 4.141 13 C -0.071 4.071 14 C -0.162 4.162 15 C -0.216 4.216 16 C 0.003 3.997 17 O -0.215 6.215 18 C 0.028 3.972 19 C -0.128 4.128 20 H 0.263 0.737 21 H -0.007 1.007 22 H -0.013 1.013 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.139 0.861 26 H 0.156 0.844 27 H 0.188 0.812 28 H 0.253 0.747 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 -16.882 -0.042 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.002 4.002 10 C -0.101 4.101 11 C -0.051 4.051 12 C -0.159 4.159 13 C -0.089 4.089 14 C -0.163 4.163 15 C -0.235 4.235 16 C -0.060 4.060 17 O -0.117 6.117 18 C -0.019 4.019 19 C -0.147 4.147 20 H 0.072 0.928 21 H 0.012 0.988 22 H 0.005 0.995 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.173 0.827 27 H 0.205 0.795 28 H 0.269 0.731 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.076 -16.712 -0.315 16.715 hybrid contribution 0.037 1.074 -0.034 1.075 sum 0.113 -15.638 -0.350 15.642 Atomic orbital electron populations 1.70121 1.07942 1.27798 1.51609 1.26022 0.95754 1.03504 0.94668 0.85409 0.78718 0.78213 0.78479 1.19852 1.20811 1.18422 1.21713 0.93751 0.92047 1.50633 0.91633 1.18930 0.94027 0.92345 0.94863 1.20597 0.97282 0.89923 1.02345 1.20001 0.97079 0.95626 0.92420 1.20960 1.00678 0.96249 0.97986 1.20547 0.96552 0.94546 0.97262 1.20405 1.04041 0.98032 0.93815 1.22870 1.06000 0.98318 0.96292 1.24897 0.96899 0.89467 0.94763 1.83982 1.61312 1.30953 1.35463 1.19759 1.00865 0.94385 0.86900 1.19875 1.02512 0.93142 0.99163 0.92780 0.98839 0.99491 0.91588 0.90673 0.84278 0.82669 0.79503 0.73081 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.93 13.29 21.45 0.28 -57.65 15 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 15 3 Si 0.97 44.54 29.54 68.60 2.03 46.57 15 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 15 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 15 9 C 0.04 1.92 4.96 29.85 0.15 2.07 15 10 C -0.06 -2.73 5.26 29.85 0.16 -2.57 15 11 C -0.05 -1.97 5.13 -19.84 -0.10 -2.07 15 12 C -0.14 -4.75 9.62 22.04 0.21 -4.53 15 13 C -0.07 -2.10 10.05 22.20 0.22 -1.87 15 14 C -0.16 -4.96 6.40 -20.21 -0.13 -5.09 15 15 C -0.22 -4.76 11.14 23.54 0.26 -4.50 15 16 C 0.00 0.07 11.96 66.85 0.80 0.87 15 17 O -0.21 -6.49 10.58 -8.98 -0.10 -6.59 15 18 C 0.03 0.97 7.42 22.99 0.17 1.14 15 19 C -0.13 -4.85 9.70 22.34 0.22 -4.64 15 20 H 0.26 15.30 8.31 -92.70 -0.77 14.53 15 21 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 15 22 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 15 23 H 0.07 2.70 8.08 -2.38 -0.02 2.68 15 24 H 0.07 2.98 8.08 -2.39 -0.02 2.96 15 25 H 0.14 4.25 8.06 -2.91 -0.02 4.23 15 26 H 0.16 3.41 8.06 -2.91 -0.02 3.39 15 27 H 0.19 2.69 8.06 -2.91 -0.02 2.67 15 28 H 0.25 2.20 8.06 -2.91 -0.02 2.17 15 29 H 0.13 4.62 8.06 -2.91 -0.02 4.59 15 Total: -1.00 -70.10 259.71 6.00 -64.10 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.13 Total: 5.41 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 2.65 Total: -51.84 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.28 Total: -57.65 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.10 Total: -6.59 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.10 6.00 -64.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222453.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.537 kcal (2) G-P(sol) polarization free energy of solvation -70.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds