Wall clock time and date at job start Mon Mar 30 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48493 * 109.47377 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46730 * 300.00061 * 3 2 1 6 6 H 1.48503 * 109.47079 * 59.99536 * 3 2 1 7 7 C 1.37878 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00385 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47608 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47608 * 180.02562 * 10 9 7 12 12 C 1.34666 * 119.72288 * 85.00063 * 11 10 9 13 13 C 1.40813 * 120.61967 * 180.02562 * 12 11 10 14 14 C 1.35876 * 119.77231 * 359.97438 * 13 12 11 15 15 C 1.40971 * 119.17545 * 359.97438 * 14 13 12 16 16 C 1.37988 * 133.70547 * 179.97438 * 15 14 13 17 17 N 1.33405 * 107.45942 * 180.02562 * 16 15 14 18 18 C 1.30909 * 109.86827 * 0.02562 * 17 16 15 19 19 N 1.35029 * 109.37059 * 0.22982 * 18 17 16 20 20 H 0.97000 * 120.00516 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47341 * 59.99672 * 9 7 2 22 22 H 1.09007 * 109.47062 * 300.00093 * 9 7 2 23 23 H 1.09000 * 109.46655 * 59.99630 * 10 9 7 24 24 H 1.08999 * 109.47173 * 300.00241 * 10 9 7 25 25 H 1.08003 * 119.68943 * 359.97438 * 12 11 10 26 26 H 1.08007 * 120.11305 * 179.97438 * 13 12 11 27 27 H 1.08002 * 120.40752 * 180.02562 * 14 13 12 28 28 H 1.07999 * 126.27540 * 0.07547 * 16 15 14 29 29 H 1.08002 * 125.31158 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4919 -4.9672 0.0012 12 6 1.0711 -5.4946 -1.1642 13 6 0.3651 -6.7128 -1.1867 14 6 0.1055 -7.3637 -0.0227 15 6 0.5511 -6.8039 1.1919 16 6 0.4578 -7.1936 2.5124 17 7 1.0690 -6.2637 3.2482 18 6 1.5370 -5.3190 2.4723 19 7 1.2368 -5.6051 1.1873 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8713 -3.6039 0.8923 24 1 2.8727 -3.6047 -0.8877 25 1 1.2764 -4.9781 -2.0903 26 1 0.0310 -7.1282 -2.1261 27 1 -0.4349 -8.2989 -0.0280 28 1 -0.0215 -8.0879 2.8823 29 1 2.0754 -4.4449 2.8080 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261224912.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:40 Heat of formation + Delta-G solvation = 69.155014 kcal Electronic energy + Delta-G solvation = -13646.513830 eV Core-core repulsion = 11342.219464 eV Total energy + Delta-G solvation = -2304.294366 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.46014 -37.41904 -34.48533 -32.93282 -31.46025 -29.65091 -27.68594 -25.46344 -23.01776 -22.24806 -21.65561 -20.12233 -17.54505 -16.61422 -15.91059 -15.45592 -15.38532 -14.55800 -14.39436 -13.56642 -13.35545 -12.92874 -12.50852 -11.98152 -11.84565 -11.53559 -11.08965 -11.02528 -10.67593 -10.38587 -10.16243 -9.99140 -9.71908 -9.28609 -8.85018 -8.48930 -7.11354 -6.12449 -4.17500 1.13228 1.59280 2.96611 3.24312 3.32368 3.35441 3.39583 3.71311 4.35326 4.77348 4.89307 5.06847 5.10443 5.23619 5.29200 5.30558 5.72724 5.93865 6.02268 6.11329 6.25700 6.41493 6.47702 6.63167 6.85514 6.94787 7.47267 7.47691 7.59784 7.83572 8.17659 8.21234 8.88750 9.48097 10.98410 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.042715 B = 0.007133 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.355646 B = 3924.573551 C = 4270.832335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.080 4.080 11 C 0.116 3.884 12 C -0.157 4.157 13 C -0.108 4.108 14 C -0.103 4.103 15 C 0.001 3.999 16 C -0.038 4.038 17 N -0.460 5.460 18 C 0.146 3.854 19 N -0.358 5.358 20 H 0.262 0.738 21 H 0.023 0.977 22 H 0.017 0.983 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.146 0.854 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.175 0.825 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -12.132 -1.684 12.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.118 4.118 11 C 0.014 3.986 12 C -0.177 4.177 13 C -0.129 4.129 14 C -0.122 4.122 15 C -0.108 4.108 16 C -0.192 4.192 17 N -0.174 5.174 18 C -0.129 4.129 19 N -0.029 5.029 20 H 0.072 0.928 21 H 0.041 0.959 22 H 0.036 0.964 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.164 0.836 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.192 0.808 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.620 -11.890 -0.756 12.024 hybrid contribution 0.199 1.030 -0.891 1.376 sum 1.819 -10.860 -1.647 11.134 Atomic orbital electron populations 1.69971 1.06144 1.26838 1.50026 1.25020 0.94844 0.99417 0.94939 0.86493 0.80070 0.83497 0.77711 1.19621 1.20902 1.20892 1.21176 0.93106 0.90546 1.51707 0.92284 1.19119 0.93425 0.90195 0.97961 1.21060 0.98665 0.89113 1.02993 1.20962 0.98942 0.95501 0.83200 1.20597 1.02543 0.97361 0.97194 1.21032 0.98566 0.95063 0.98237 1.20341 1.01661 1.00757 0.89473 1.19746 1.04231 0.89778 0.97073 1.22407 1.07882 1.01625 0.87294 1.69989 1.12023 1.02315 1.33070 1.24850 1.08014 1.02690 0.77352 1.42940 1.36014 1.16650 1.07299 0.92811 0.95909 0.96417 0.91430 0.89818 0.83650 0.85061 0.84303 0.80792 0.77403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.53 -14.17 9.11 -34.44 -0.31 -14.48 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 15 9 C 0.03 0.74 4.95 -27.89 -0.14 0.60 15 10 C -0.08 -1.54 5.17 -27.89 -0.14 -1.68 15 11 C 0.12 2.06 6.04 -81.52 -0.49 1.57 15 12 C -0.16 -2.43 9.59 -39.87 -0.38 -2.81 15 13 C -0.11 -1.44 10.07 -39.46 -0.40 -1.83 15 14 C -0.10 -1.40 10.11 -39.39 -0.40 -1.79 15 15 C 0.00 0.01 6.80 -84.09 -0.57 -0.56 15 16 C -0.04 -0.61 12.02 -16.96 -0.20 -0.82 15 17 N -0.46 -8.37 11.20 -13.95 -0.16 -8.53 15 18 C 0.15 2.63 12.11 -90.05 -1.09 1.54 15 19 N -0.36 -6.47 2.94 -58.24 -0.17 -6.65 15 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.02 0.47 8.14 -51.92 -0.42 0.05 15 23 H 0.07 1.24 7.30 -51.93 -0.38 0.86 15 24 H 0.08 1.48 8.10 -51.93 -0.42 1.06 15 25 H 0.15 2.02 8.06 -52.48 -0.42 1.60 15 26 H 0.13 1.31 8.06 -52.48 -0.42 0.89 15 27 H 0.14 1.40 8.06 -52.49 -0.42 0.98 15 28 H 0.17 2.19 8.06 -52.49 -0.42 1.77 15 29 H 0.21 3.35 7.65 -52.49 -0.40 2.95 15 LS Contribution 257.33 15.07 3.88 3.88 Total: -1.00 -31.07 257.33 -8.24 -39.31 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.28 Total: 0.17 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -4.23 Total: -18.70 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.41 Total: -40.62 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.07 -8.24 -39.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224912.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.467 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds