Wall clock time and date at job start Mon Mar 30 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99709 * 2 1 4 4 H 1.48500 * 109.47439 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47342 * 300.00321 * 3 2 1 6 6 H 1.48501 * 109.47461 * 60.00007 * 3 2 1 7 7 C 1.37875 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99566 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46792 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47175 * 180.02562 * 10 9 7 12 12 C 1.40472 * 119.78202 * 270.01888 * 11 10 9 13 13 C 1.36058 * 119.59091 * 179.97438 * 12 11 10 14 14 C 1.40797 * 119.22443 * 359.97438 * 13 12 11 15 15 C 1.38932 * 132.96512 * 180.34970 * 14 13 12 16 16 C 1.38542 * 107.57159 * 180.08563 * 15 14 13 17 17 N 1.31488 * 109.00260 * 359.56721 * 16 15 14 18 18 N 1.37126 * 119.97114 * 359.97438 * 14 13 12 19 19 C 1.34936 * 119.78452 * 89.99631 * 11 10 9 20 20 H 0.97006 * 120.00300 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47377 * 60.00356 * 9 7 2 22 22 H 1.08994 * 109.47476 * 299.99847 * 9 7 2 23 23 H 1.08991 * 109.47405 * 59.99669 * 10 9 7 24 24 H 1.09009 * 109.47070 * 299.99631 * 10 9 7 25 25 H 1.08007 * 120.20246 * 0.02562 * 12 11 10 26 26 H 1.07999 * 120.38931 * 179.97438 * 13 12 11 27 27 H 1.08005 * 126.21517 * 359.91593 * 15 14 13 28 28 H 1.08002 * 125.50224 * 179.84104 * 16 15 14 29 29 H 1.07999 * 119.67211 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 6 1.4920 -4.9671 -0.0012 12 6 1.1424 -5.5716 1.2177 13 6 0.4617 -6.7496 1.2126 14 6 0.1199 -7.3407 -0.0187 15 6 -0.5600 -8.5050 -0.3538 16 6 -0.5991 -8.5833 -1.7364 17 7 0.0078 -7.5322 -2.2422 18 7 0.4728 -6.7285 -1.1939 19 6 1.1572 -5.5472 -1.1726 20 1 -0.4851 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.8721 -3.6042 0.8893 24 1 2.8721 -3.6042 -0.8906 25 1 1.4116 -5.1035 2.1532 26 1 0.1868 -7.2258 2.1422 27 1 -0.9793 -9.2206 0.3380 28 1 -1.0582 -9.3772 -2.3069 29 1 1.4322 -5.0718 -2.1025 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261232097.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:32 Heat of formation + Delta-G solvation = 86.754609 kcal Electronic energy + Delta-G solvation = -13358.661101 eV Core-core repulsion = 11055.129911 eV Total energy + Delta-G solvation = -2303.531190 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.70264 -37.49861 -33.86027 -32.65450 -31.94060 -29.26759 -27.99472 -25.16153 -23.23928 -22.25511 -21.19579 -20.34360 -17.18091 -16.55071 -16.20273 -15.28493 -14.98374 -14.50855 -14.39950 -13.93432 -12.88023 -12.80742 -12.47036 -11.92847 -11.71382 -11.55624 -11.00411 -10.93365 -10.61060 -10.50494 -10.29095 -9.97200 -9.75264 -9.20348 -8.76011 -8.42673 -7.31003 -6.06762 -4.10670 1.05159 1.40663 2.52904 2.92859 3.27150 3.35125 3.38460 3.66495 4.40358 4.52443 4.80738 5.10824 5.16875 5.23407 5.29253 5.58754 5.75736 5.82394 5.99409 6.06974 6.36066 6.46553 6.57758 6.65649 6.75795 6.90351 7.15947 7.57954 7.67756 7.80010 7.91407 8.30630 8.96420 9.54277 11.04168 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.061471 B = 0.005738 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.393176 B = 4878.479849 C = 5003.366814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.068 4.068 11 C -0.098 4.098 12 C -0.064 4.064 13 C -0.129 4.129 14 C 0.103 3.897 15 C -0.304 4.304 16 C 0.067 3.933 17 N -0.332 5.332 18 N -0.264 5.264 19 C 0.092 3.908 20 H 0.261 0.739 21 H 0.018 0.982 22 H 0.019 0.981 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.142 0.858 26 H 0.144 0.856 27 H 0.149 0.851 28 H 0.186 0.814 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 -13.599 1.581 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.106 4.106 11 C -0.101 4.101 12 C -0.087 4.087 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.333 4.333 16 C -0.109 4.109 17 N -0.156 5.156 18 N -0.030 5.030 19 C -0.032 4.032 20 H 0.071 0.929 21 H 0.036 0.964 22 H 0.038 0.962 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.160 0.840 26 H 0.161 0.839 27 H 0.166 0.834 28 H 0.203 0.797 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.209 -12.977 0.357 13.038 hybrid contribution 0.005 0.538 0.721 0.900 sum 1.214 -12.438 1.078 12.544 Atomic orbital electron populations 1.69977 1.06098 1.26664 1.50451 1.25029 0.94842 0.99352 0.95169 0.86527 0.80097 0.83685 0.77635 1.19664 1.20981 1.20983 1.21246 0.93129 0.90788 1.51092 0.92374 1.19134 0.93662 0.90488 0.97742 1.20775 0.98163 0.89479 1.02173 1.20032 1.00800 0.98431 0.90873 1.21270 0.95028 0.93670 0.98754 1.20554 1.01853 0.96949 0.95456 1.19665 0.99558 0.94975 0.87557 1.21179 1.15348 1.01320 0.95492 1.23641 0.96809 0.96130 0.94279 1.77834 1.23537 1.06019 1.08238 1.46241 1.35471 1.15550 1.05787 1.21364 0.96410 0.84519 1.00931 0.92935 0.96380 0.96234 0.91199 0.91659 0.84047 0.83865 0.83369 0.79738 0.81653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.66 4.96 -27.88 -0.14 0.52 15 10 C -0.07 -1.27 5.27 -27.88 -0.15 -1.42 15 11 C -0.10 -1.66 5.10 -104.95 -0.54 -2.19 15 12 C -0.06 -0.96 9.74 -39.52 -0.38 -1.34 15 13 C -0.13 -1.79 10.11 -39.40 -0.40 -2.19 15 14 C 0.10 1.64 6.81 -84.27 -0.57 1.06 15 15 C -0.30 -4.24 10.92 -39.21 -0.43 -4.67 15 16 C 0.07 0.94 11.94 -17.59 -0.21 0.73 15 17 N -0.33 -5.76 12.66 30.46 0.39 -5.37 15 18 N -0.26 -4.67 3.90 -10.71 -0.04 -4.71 15 19 C 0.09 1.59 10.80 -16.63 -0.18 1.41 15 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 22 H 0.02 0.51 8.14 -51.93 -0.42 0.08 15 23 H 0.07 1.23 8.09 -51.93 -0.42 0.81 15 24 H 0.06 1.17 8.07 -51.92 -0.42 0.75 15 25 H 0.14 1.82 8.06 -52.48 -0.42 1.40 15 26 H 0.14 1.52 8.06 -52.49 -0.42 1.09 15 27 H 0.15 1.62 8.06 -52.48 -0.42 1.20 15 28 H 0.19 1.79 8.06 -52.49 -0.42 1.37 15 29 H 0.17 2.66 8.06 -52.49 -0.42 2.24 15 LS Contribution 259.69 15.07 3.91 3.91 Total: -1.00 -31.41 259.69 -6.77 -38.19 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.34 Total: -1.36 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -3.41 Total: -21.11 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 1.08 Total: -35.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.41 -6.77 -38.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232097.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.941 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds