Wall clock time and date at job start Mon Mar 30 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99709 * 2 1 4 4 H 1.48500 * 109.47439 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47342 * 300.00321 * 3 2 1 6 6 H 1.48501 * 109.47461 * 60.00007 * 3 2 1 7 7 C 1.37875 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99566 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46792 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47175 * 180.02562 * 10 9 7 12 12 C 1.40472 * 119.78202 * 270.01888 * 11 10 9 13 13 C 1.36058 * 119.59091 * 179.97438 * 12 11 10 14 14 C 1.40797 * 119.22443 * 359.97438 * 13 12 11 15 15 C 1.38932 * 132.96512 * 180.34970 * 14 13 12 16 16 C 1.38542 * 107.57159 * 180.08563 * 15 14 13 17 17 N 1.31488 * 109.00260 * 359.56721 * 16 15 14 18 18 N 1.37126 * 119.97114 * 359.97438 * 14 13 12 19 19 C 1.34936 * 119.78452 * 89.99631 * 11 10 9 20 20 H 0.97006 * 120.00300 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47377 * 60.00356 * 9 7 2 22 22 H 1.08994 * 109.47476 * 299.99847 * 9 7 2 23 23 H 1.08991 * 109.47405 * 59.99669 * 10 9 7 24 24 H 1.09009 * 109.47070 * 299.99631 * 10 9 7 25 25 H 1.08007 * 120.20246 * 0.02562 * 12 11 10 26 26 H 1.07999 * 120.38931 * 179.97438 * 13 12 11 27 27 H 1.08005 * 126.21517 * 359.91593 * 15 14 13 28 28 H 1.08002 * 125.50224 * 179.84104 * 16 15 14 29 29 H 1.07999 * 119.67211 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 6 1.4920 -4.9671 -0.0012 12 6 1.1424 -5.5716 1.2177 13 6 0.4617 -6.7496 1.2126 14 6 0.1199 -7.3407 -0.0187 15 6 -0.5600 -8.5050 -0.3538 16 6 -0.5991 -8.5833 -1.7364 17 7 0.0078 -7.5322 -2.2422 18 7 0.4728 -6.7285 -1.1939 19 6 1.1572 -5.5472 -1.1726 20 1 -0.4851 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.8721 -3.6042 0.8893 24 1 2.8721 -3.6042 -0.8906 25 1 1.4116 -5.1035 2.1532 26 1 0.1868 -7.2258 2.1422 27 1 -0.9793 -9.2206 0.3380 28 1 -1.0582 -9.3772 -2.3069 29 1 1.4322 -5.0718 -2.1025 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232097.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:32 Heat of formation + Delta-G solvation = 68.635121 kcal Electronic energy + Delta-G solvation = -13359.446821 eV Core-core repulsion = 11055.129911 eV Total energy + Delta-G solvation = -2304.316910 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.87722 -38.75717 -35.68195 -33.87053 -33.62665 -30.74365 -29.33999 -26.88769 -24.55445 -23.74002 -22.41542 -21.83312 -18.56089 -18.39261 -17.45226 -16.60649 -16.43017 -16.20353 -15.52559 -15.10617 -14.53237 -14.48179 -13.95809 -13.45331 -13.16308 -12.91428 -12.77956 -12.43395 -12.35019 -11.84354 -11.61361 -11.57636 -11.41491 -11.20917 -10.56217 -10.09367 -8.49621 -8.19315 -6.31137 -0.11814 0.19330 1.34138 1.41413 1.42441 1.55096 1.81880 2.40653 2.48547 3.14346 3.38227 3.73630 3.93095 3.95918 4.08250 4.45249 4.59321 4.69927 4.73366 4.83772 4.90548 5.13877 5.19207 5.30075 5.50700 5.55032 5.71175 5.73667 5.84243 5.95457 6.21975 6.63172 6.86829 7.38813 8.92037 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.061471 B = 0.005738 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.393176 B = 4878.479849 C = 5003.366814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.032 3.968 10 C -0.052 4.052 11 C -0.104 4.104 12 C -0.080 4.080 13 C -0.113 4.113 14 C 0.076 3.924 15 C -0.295 4.295 16 C 0.068 3.932 17 N -0.372 5.372 18 N -0.284 5.284 19 C 0.074 3.926 20 H 0.262 0.738 21 H -0.014 1.014 22 H -0.004 1.004 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.161 0.839 26 H 0.183 0.817 27 H 0.183 0.817 28 H 0.226 0.774 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -14.759 2.551 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.005 4.005 10 C -0.090 4.090 11 C -0.108 4.108 12 C -0.103 4.103 13 C -0.132 4.132 14 C -0.044 4.044 15 C -0.324 4.324 16 C -0.107 4.107 17 N -0.196 5.196 18 N -0.051 5.051 19 C -0.050 4.050 20 H 0.071 0.929 21 H 0.004 0.996 22 H 0.015 0.985 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.179 0.821 26 H 0.200 0.800 27 H 0.200 0.800 28 H 0.242 0.758 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.712 -14.150 1.333 14.315 hybrid contribution -0.224 0.762 0.396 0.888 sum 1.487 -13.388 1.729 13.581 Atomic orbital electron populations 1.70117 1.07911 1.27666 1.51836 1.25981 0.95682 1.03420 0.94827 0.85409 0.79291 0.78834 0.77569 1.18186 1.20839 1.20496 1.21737 0.93837 0.91957 1.50216 0.91425 1.18978 0.94095 0.92379 0.95016 1.20485 0.96990 0.88426 1.03142 1.19872 1.01243 0.97801 0.91923 1.21482 0.95817 0.94395 0.98569 1.20990 0.99893 0.96119 0.96241 1.20329 1.00304 0.95924 0.87812 1.21702 1.13807 1.00835 0.96025 1.24395 0.95483 0.95836 0.94976 1.77780 1.24997 1.07382 1.09469 1.46351 1.36343 1.15847 1.06563 1.21374 0.97292 0.85234 1.01087 0.92875 0.99597 0.98519 0.89693 0.91170 0.82103 0.80023 0.79964 0.75774 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.21 15 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 15 3 Si 0.96 43.40 29.54 68.60 2.03 45.42 15 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 7 C -0.54 -29.51 9.11 25.60 0.23 -29.28 15 8 H 0.07 3.49 7.74 -2.91 -0.02 3.46 15 9 C 0.03 1.64 4.96 29.85 0.15 1.79 15 10 C -0.05 -1.98 5.27 29.85 0.16 -1.83 15 11 C -0.10 -3.57 5.10 -20.08 -0.10 -3.67 15 12 C -0.08 -2.29 9.74 22.31 0.22 -2.07 15 13 C -0.11 -2.90 10.11 22.39 0.23 -2.67 15 14 C 0.08 2.29 6.81 39.11 0.27 2.55 15 15 C -0.29 -7.35 10.92 22.51 0.25 -7.11 15 16 C 0.07 1.76 11.94 84.82 1.01 2.77 15 17 N -0.37 -12.71 12.66 -57.54 -0.73 -13.44 15 18 N -0.28 -10.01 3.90 -187.79 -0.73 -10.74 15 19 C 0.07 2.63 10.80 83.20 0.90 3.53 15 20 H 0.26 14.92 8.31 -92.70 -0.77 14.15 15 21 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 15 22 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 15 23 H 0.08 2.93 8.09 -2.39 -0.02 2.91 15 24 H 0.07 2.55 8.07 -2.38 -0.02 2.53 15 25 H 0.16 3.85 8.06 -2.91 -0.02 3.83 15 26 H 0.18 3.11 8.06 -2.91 -0.02 3.09 15 27 H 0.18 3.16 8.06 -2.91 -0.02 3.14 15 28 H 0.23 3.59 8.06 -2.91 -0.02 3.57 15 29 H 0.16 5.55 8.06 -2.91 -0.02 5.52 15 Total: -1.00 -68.83 259.69 5.75 -63.08 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.13 Total: 7.50 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 3.76 Total: -35.61 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -1.18 Total: -80.40 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.83 5.75 -63.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232097.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.717 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds