Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99495 * 2 1 4 4 H 1.48504 * 109.47353 * 269.99656 * 3 2 1 5 5 H 1.48496 * 109.47752 * 29.99941 * 3 2 1 6 6 H 1.48507 * 109.46872 * 149.99926 * 3 2 1 7 7 C 1.37881 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47035 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46964 * 179.97438 * 10 9 7 12 12 C 1.38541 * 125.49489 * 124.99999 * 11 10 9 13 13 C 1.38935 * 107.56849 * 180.02562 * 12 11 10 14 14 C 1.40792 * 132.96657 * 180.28061 * 13 12 11 15 15 C 1.36065 * 119.22495 * 180.21656 * 14 13 12 16 16 C 1.40473 * 119.59132 * 359.50257 * 15 14 13 17 17 C 1.34939 * 120.42877 * 0.23406 * 16 15 14 18 18 N 1.36535 * 120.65943 * 0.02562 * 17 16 15 19 19 N 1.31489 * 125.49522 * 305.03879 * 11 10 9 20 20 H 0.96994 * 120.00293 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47264 * 59.99187 * 9 7 2 22 22 H 1.09006 * 109.46980 * 299.99654 * 9 7 2 23 23 H 1.09003 * 109.47340 * 60.00241 * 10 9 7 24 24 H 1.09000 * 109.47243 * 299.99340 * 10 9 7 25 25 H 1.08003 * 126.21846 * 0.02562 * 12 11 10 26 26 H 1.07997 * 120.38681 * 359.97438 * 14 13 12 27 27 H 1.08001 * 120.20475 * 179.75806 * 15 14 13 28 28 H 1.07995 * 119.78755 * 180.26042 * 16 15 14 29 29 H 1.08003 * 119.66630 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4920 -4.9672 0.0012 12 6 1.6498 -5.9876 -0.9226 13 6 0.7761 -7.0094 -0.5720 14 6 0.5045 -8.2733 -1.1298 15 6 -0.4339 -9.0684 -0.5480 16 6 -1.1060 -8.6211 0.6015 17 6 -0.8298 -7.4091 1.1266 18 7 0.1054 -6.5977 0.5510 19 7 0.5783 -5.3208 0.8781 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.8721 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8895 25 1 2.3286 -5.9886 -1.7626 26 1 1.0320 -8.6060 -2.0115 27 1 -0.6576 -10.0393 -0.9649 28 1 -1.8484 -9.2514 1.0684 29 1 -1.3536 -7.0777 2.0110 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232913.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = 67.824758 kcal Electronic energy + Delta-G solvation = -13289.223354 eV Core-core repulsion = 10984.871304 eV Total energy + Delta-G solvation = -2304.352050 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.87507 -38.39627 -35.80443 -34.06892 -33.21292 -30.95809 -29.39735 -27.35419 -24.39035 -23.95382 -22.77874 -21.03486 -18.55370 -18.21513 -17.38115 -16.65408 -16.52478 -16.39580 -15.55619 -14.91341 -14.86157 -14.45963 -13.91271 -13.27445 -13.09227 -12.86605 -12.66125 -12.61059 -12.38036 -11.97979 -11.74390 -11.37054 -11.33981 -11.20433 -10.57654 -10.09180 -8.51941 -8.20486 -6.33773 -0.07136 0.21734 1.39825 1.42954 1.43802 1.54321 1.74334 2.41330 2.53841 3.12232 3.35583 3.68265 3.95482 4.07065 4.23033 4.41752 4.49059 4.67071 4.78025 4.82737 4.92135 5.04906 5.16991 5.31174 5.45454 5.57887 5.64095 5.68970 5.80876 6.07486 6.19041 6.69231 6.83163 7.35749 8.92142 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.071724 B = 0.005513 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.290877 B = 5078.030502 C = 5284.407952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.041 3.959 10 C -0.027 4.027 11 C 0.099 3.901 12 C -0.311 4.311 13 C 0.086 3.914 14 C -0.127 4.127 15 C -0.071 4.071 16 C -0.146 4.146 17 C 0.072 3.928 18 N -0.289 5.289 19 N -0.370 5.370 20 H 0.264 0.736 21 H -0.018 1.018 22 H -0.014 1.014 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.170 0.830 26 H 0.173 0.827 27 H 0.186 0.814 28 H 0.197 0.803 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -20.344 -1.668 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.089 0.911 9 C 0.003 3.997 10 C -0.067 4.067 11 C -0.057 4.057 12 C -0.340 4.340 13 C -0.033 4.033 14 C -0.146 4.146 15 C -0.093 4.093 16 C -0.167 4.167 17 C -0.052 4.052 18 N -0.055 5.055 19 N -0.196 5.196 20 H 0.072 0.928 21 H 0.001 0.999 22 H 0.004 0.996 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.188 0.812 26 H 0.190 0.810 27 H 0.204 0.796 28 H 0.214 0.786 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.188 -19.745 -0.571 19.789 hybrid contribution 0.456 1.089 -0.498 1.281 sum -0.733 -18.656 -1.070 18.701 Atomic orbital electron populations 1.70152 1.08183 1.27846 1.51563 1.26115 0.95795 1.03829 0.94496 0.85312 0.78582 0.77648 0.78666 1.19405 1.20876 1.18304 1.21699 0.93897 0.91778 1.50804 0.91128 1.18818 0.93894 0.92581 0.94376 1.20146 0.96700 0.87067 1.02742 1.22666 0.93534 0.97033 0.92434 1.21533 1.10560 0.94466 1.07411 1.20211 0.95660 0.97377 0.90048 1.21032 1.01237 0.89829 1.02550 1.21727 0.92712 1.01022 0.93879 1.21421 1.03088 0.94103 0.98134 1.22181 0.91422 0.91185 1.00462 1.46608 1.26704 1.12472 1.19738 1.77858 1.20664 0.93910 1.27124 0.92782 0.99935 0.99555 0.90912 0.89092 0.81247 0.81004 0.79642 0.78609 0.80825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.42 13.29 21.45 0.28 -60.14 15 2 C -0.01 -0.30 5.46 84.66 0.46 0.16 15 3 Si 0.97 45.81 29.54 68.60 2.03 47.83 15 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 15 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 7 C -0.54 -32.65 9.11 25.60 0.23 -32.42 15 8 H 0.07 3.95 7.74 -2.91 -0.02 3.92 15 9 C 0.04 2.41 4.93 29.85 0.15 2.55 15 10 C -0.03 -1.29 5.72 29.85 0.17 -1.12 15 11 C 0.10 4.42 6.43 42.68 0.27 4.70 15 12 C -0.31 -11.54 10.81 22.51 0.24 -11.30 15 13 C 0.09 2.81 6.81 39.11 0.27 3.08 15 14 C -0.13 -2.63 10.11 22.39 0.23 -2.40 15 15 C -0.07 -0.99 10.07 22.31 0.22 -0.77 15 16 C -0.15 -2.24 9.98 22.06 0.22 -2.02 15 17 C 0.07 1.82 11.19 83.20 0.93 2.75 15 18 N -0.29 -10.47 3.90 -187.78 -0.73 -11.20 15 19 N -0.37 -17.11 12.62 -47.88 -0.60 -17.72 15 20 H 0.26 15.83 8.31 -92.71 -0.77 15.06 15 21 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 15 22 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 15 23 H 0.07 3.31 8.14 -2.39 -0.02 3.29 15 24 H 0.09 3.84 8.11 -2.39 -0.02 3.83 15 25 H 0.17 5.25 8.06 -2.91 -0.02 5.23 15 26 H 0.17 2.45 8.06 -2.91 -0.02 2.42 15 27 H 0.19 0.86 8.06 -2.91 -0.02 0.84 15 28 H 0.20 1.16 8.06 -2.91 -0.02 1.14 15 29 H 0.17 3.74 8.06 -2.91 -0.02 3.72 15 Total: -1.00 -80.65 260.16 5.51 -75.14 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.13 Total: 2.87 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 3.40 Total: -36.79 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -1.05 Total: -89.06 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -80.65 5.51 -75.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232913.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.963 kcal (2) G-P(sol) polarization free energy of solvation -80.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds