Wall clock time and date at job start Mon Mar 30 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47253 * 269.99905 * 3 2 1 5 5 H 1.48497 * 109.47297 * 30.00544 * 3 2 1 6 6 H 1.48505 * 109.46705 * 150.00092 * 3 2 1 7 7 C 1.37874 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99905 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99977 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47456 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.21172 * 304.60205 * 10 9 7 12 12 C 1.49718 * 109.34101 * 64.20071 * 10 9 7 13 13 C 1.52293 * 104.75325 * 219.74120 * 12 10 9 14 14 S 1.74437 * 114.80134 * 267.53359 * 13 12 10 15 15 C 1.84949 * 101.83955 * 62.10415 * 14 13 12 16 16 C 1.50369 * 109.16443 * 291.99297 * 15 14 13 17 17 C 1.53204 * 109.34456 * 185.00137 * 10 9 7 18 18 H 1.08997 * 107.96091 * 75.64485 * 17 10 9 19 19 O 1.42902 * 107.92610 * 319.38595 * 17 10 9 20 20 H 0.96995 * 120.00029 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47658 * 60.00001 * 9 7 2 22 22 H 1.08999 * 109.47094 * 299.99992 * 9 7 2 23 23 H 1.08995 * 110.37853 * 338.55173 * 12 10 9 24 24 H 1.09001 * 110.37163 * 100.76832 * 12 10 9 25 25 H 1.09000 * 108.41465 * 28.90777 * 13 12 10 26 26 H 1.08996 * 108.41756 * 146.32316 * 13 12 10 27 27 H 1.08997 * 109.52477 * 172.08309 * 15 14 13 28 28 H 1.09002 * 109.51760 * 51.89340 * 15 14 13 29 29 H 1.09001 * 108.04125 * 329.05823 * 16 15 14 30 30 H 1.09007 * 108.03403 * 212.62344 * 16 15 14 31 31 H 0.96698 * 114.00031 * 172.75294 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 1 3.5904 -3.1693 0.8466 12 6 3.6068 -3.3092 -1.2726 13 6 3.2105 -4.7189 -0.8541 14 16 4.4934 -5.8973 -0.9462 15 6 5.7162 -5.2225 0.2663 16 6 6.2866 -3.9389 -0.2704 17 6 5.5485 -2.6348 0.1244 18 1 5.8004 -2.4064 1.1600 19 8 6.0557 -1.5771 -0.6917 20 1 -0.4850 0.8400 0.0004 21 1 3.8753 -0.6804 0.8888 22 1 3.8745 -0.6800 -0.8911 23 1 2.7560 -2.7917 -1.7157 24 1 4.4396 -3.3391 -1.9752 25 1 2.8481 -4.6840 0.1733 26 1 2.3939 -5.0516 -1.4948 27 1 6.5194 -5.9445 0.4138 28 1 5.2186 -5.0306 1.2169 29 1 6.2989 -4.0038 -1.3584 30 1 7.3187 -3.8593 0.0713 31 1 7.0055 -1.4247 -0.5927 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234913.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:03 Heat of formation + Delta-G solvation = -65.508421 kcal Electronic energy + Delta-G solvation = -13295.986586 eV Core-core repulsion = 11089.003976 eV Total energy + Delta-G solvation = -2206.982610 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.52846 -34.91766 -33.05277 -32.10819 -29.90922 -26.83809 -24.20693 -22.78802 -21.12926 -18.98708 -17.33804 -16.61203 -16.35239 -14.80745 -14.62629 -14.09640 -13.79906 -13.37909 -13.14281 -12.84196 -12.46571 -12.30214 -11.97279 -11.42397 -11.21635 -10.85661 -10.55039 -10.22280 -10.01388 -9.91509 -9.58627 -9.43213 -9.25321 -8.99871 -8.49447 -7.44798 -6.01568 -3.98568 2.00868 2.80255 3.35091 3.41700 3.48199 4.49283 4.51647 4.79329 5.03283 5.19651 5.26443 5.34583 5.42145 5.52784 5.65473 5.75030 5.89973 6.05636 6.17851 6.37705 6.48806 6.63119 6.91189 7.09133 7.37217 7.56940 7.81026 8.01253 8.56082 9.03145 9.62062 11.11553 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040854 B = 0.009524 C = 0.008085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.209121 B = 2939.259389 C = 3462.160395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.069 4.069 11 H 0.071 0.929 12 C -0.103 4.103 13 C -0.113 4.113 14 S -0.257 6.257 15 C -0.064 4.064 16 C -0.155 4.155 17 C 0.108 3.892 18 H 0.038 0.962 19 O -0.553 6.553 20 H 0.262 0.738 21 H 0.010 0.990 22 H 0.026 0.974 23 H 0.097 0.903 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.719 -8.006 0.252 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.035 4.035 10 C -0.087 4.087 11 H 0.089 0.911 12 C -0.143 4.143 13 C -0.261 4.261 14 S -0.031 6.031 15 C -0.212 4.212 16 C -0.194 4.194 17 C 0.049 3.951 18 H 0.057 0.943 19 O -0.357 6.357 20 H 0.072 0.928 21 H 0.028 0.972 22 H 0.044 0.956 23 H 0.116 0.884 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 11.957 -8.786 -0.548 14.848 hybrid contribution 0.771 1.954 1.002 2.328 sum 12.728 -6.832 0.454 14.453 Atomic orbital electron populations 1.69920 1.06273 1.26796 1.51448 1.25004 0.94677 0.99141 0.94648 0.86774 0.80310 0.83632 0.78546 1.20337 1.21668 1.19018 1.21182 0.89587 0.94317 1.50517 0.90974 1.19477 0.96228 0.90894 0.96938 1.20868 0.89583 1.00806 0.97456 0.91126 1.21266 1.02804 0.92143 0.98048 1.22810 0.98767 0.98713 1.05827 1.85974 1.21420 1.37323 1.58345 1.23151 0.99521 0.99054 0.99447 1.22398 0.99440 0.94227 1.03334 1.22497 0.95392 0.84648 0.92535 0.94345 1.86756 1.26775 1.54354 1.67777 0.92848 0.97159 0.95614 0.88426 0.91186 0.89874 0.88560 0.88218 0.89775 0.90002 0.91818 0.79280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.98 13.96 55.43 0.77 -27.20 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.52 -14.55 8.53 -34.44 -0.29 -14.85 16 8 H 0.07 2.15 7.72 -52.48 -0.41 1.74 16 9 C 0.00 0.05 2.88 -27.89 -0.08 -0.03 16 10 C -0.07 -1.33 1.77 -92.14 -0.16 -1.49 16 11 H 0.07 1.38 6.70 -51.93 -0.35 1.03 16 12 C -0.10 -1.93 5.02 -28.72 -0.14 -2.07 16 13 C -0.11 -1.85 5.44 36.80 0.20 -1.65 16 14 S -0.26 -3.73 21.73 -107.50 -2.34 -6.06 16 15 C -0.06 -0.77 6.23 35.85 0.22 -0.55 16 16 C -0.15 -1.93 4.60 -27.01 -0.12 -2.06 16 17 C 0.11 1.70 2.94 -25.59 -0.08 1.63 16 18 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 19 O -0.55 -9.00 11.77 -35.23 -0.41 -9.41 16 20 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 21 H 0.01 0.25 7.20 -51.93 -0.37 -0.12 16 22 H 0.03 0.65 6.89 -51.93 -0.36 0.29 16 23 H 0.10 2.10 6.71 -51.93 -0.35 1.75 16 24 H 0.07 1.26 6.52 -51.93 -0.34 0.92 16 25 H 0.08 1.41 6.79 -48.46 -0.33 1.08 16 26 H 0.10 1.56 8.14 -48.30 -0.39 1.17 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 29 H 0.08 1.12 6.83 -51.93 -0.35 0.76 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.36 4.01 9.06 45.56 0.41 4.43 16 LS Contribution 251.89 15.07 3.80 3.80 Total: -1.00 -31.17 251.89 -7.09 -38.26 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.69 Total: 2.27 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -0.55 Total: -19.24 kcal Atomic # 7 Polarization: -27.98 SS G_CDS: 0.77 Total: -27.20 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.41 Total: -9.41 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -2.34 Total: -6.06 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.17 -7.09 -38.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234913.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.251 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds