Wall clock time and date at job start Mon Mar 30 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47253 * 269.99905 * 3 2 1 5 5 H 1.48497 * 109.47297 * 30.00544 * 3 2 1 6 6 H 1.48505 * 109.46705 * 150.00092 * 3 2 1 7 7 C 1.37874 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99905 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99977 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47456 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.21172 * 304.60205 * 10 9 7 12 12 C 1.49718 * 109.34101 * 64.20071 * 10 9 7 13 13 C 1.52293 * 104.75325 * 219.74120 * 12 10 9 14 14 S 1.74437 * 114.80134 * 267.53359 * 13 12 10 15 15 C 1.84949 * 101.83955 * 62.10415 * 14 13 12 16 16 C 1.50369 * 109.16443 * 291.99297 * 15 14 13 17 17 C 1.53204 * 109.34456 * 185.00137 * 10 9 7 18 18 H 1.08997 * 107.96091 * 75.64485 * 17 10 9 19 19 O 1.42902 * 107.92610 * 319.38595 * 17 10 9 20 20 H 0.96995 * 120.00029 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47658 * 60.00001 * 9 7 2 22 22 H 1.08999 * 109.47094 * 299.99992 * 9 7 2 23 23 H 1.08995 * 110.37853 * 338.55173 * 12 10 9 24 24 H 1.09001 * 110.37163 * 100.76832 * 12 10 9 25 25 H 1.09000 * 108.41465 * 28.90777 * 13 12 10 26 26 H 1.08996 * 108.41756 * 146.32316 * 13 12 10 27 27 H 1.08997 * 109.52477 * 172.08309 * 15 14 13 28 28 H 1.09002 * 109.51760 * 51.89340 * 15 14 13 29 29 H 1.09001 * 108.04125 * 329.05823 * 16 15 14 30 30 H 1.09007 * 108.03403 * 212.62344 * 16 15 14 31 31 H 0.96698 * 114.00031 * 172.75294 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 1 3.5904 -3.1693 0.8466 12 6 3.6068 -3.3092 -1.2726 13 6 3.2105 -4.7189 -0.8541 14 16 4.4934 -5.8973 -0.9462 15 6 5.7162 -5.2225 0.2663 16 6 6.2866 -3.9389 -0.2704 17 6 5.5485 -2.6348 0.1244 18 1 5.8004 -2.4064 1.1600 19 8 6.0557 -1.5771 -0.6917 20 1 -0.4850 0.8400 0.0004 21 1 3.8753 -0.6804 0.8888 22 1 3.8745 -0.6800 -0.8911 23 1 2.7560 -2.7917 -1.7157 24 1 4.4396 -3.3391 -1.9752 25 1 2.8481 -4.6840 0.1733 26 1 2.3939 -5.0516 -1.4948 27 1 6.5194 -5.9445 0.4138 28 1 5.2186 -5.0306 1.2169 29 1 6.2989 -4.0038 -1.3584 30 1 7.3187 -3.8593 0.0713 31 1 7.0055 -1.4247 -0.5927 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234913.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:03 Heat of formation + Delta-G solvation = -87.377023 kcal Electronic energy + Delta-G solvation = -13296.934880 eV Core-core repulsion = 11089.003976 eV Total energy + Delta-G solvation = -2207.930904 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.88321 -36.35340 -34.81575 -33.56985 -31.64580 -28.45000 -25.62104 -24.25472 -22.79938 -20.43741 -19.00676 -18.28925 -17.58147 -16.45955 -15.93292 -15.68407 -15.32095 -14.70190 -14.52919 -14.38727 -14.16274 -13.66936 -13.40409 -12.95651 -12.94434 -12.50946 -12.07106 -11.80455 -11.77121 -11.45889 -11.38227 -10.95161 -10.74259 -10.62527 -10.57227 -8.61158 -8.28206 -6.29584 0.91728 1.34403 1.34492 1.47903 1.60735 2.36134 3.07551 3.40733 3.70193 3.82346 3.87650 4.07186 4.18909 4.42798 4.48862 4.59938 4.74032 4.77452 4.87119 4.99421 5.09270 5.16680 5.32103 5.36810 5.50331 5.66977 5.74986 6.30829 6.76960 7.05968 7.34326 8.88130 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040854 B = 0.009524 C = 0.008085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.209121 B = 2939.259389 C = 3462.160395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.519 4.519 8 H 0.038 0.962 9 C 0.010 3.990 10 C -0.069 4.069 11 H 0.064 0.936 12 C -0.094 4.094 13 C -0.109 4.109 14 S -0.259 6.259 15 C -0.059 4.059 16 C -0.145 4.145 17 C 0.111 3.889 18 H 0.050 0.950 19 O -0.577 6.577 20 H 0.264 0.736 21 H 0.007 0.993 22 H 0.017 0.983 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.133 0.867 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.777 -8.250 0.743 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.175 1.175 7 C -0.557 4.557 8 H 0.056 0.944 9 C -0.027 4.027 10 C -0.088 4.088 11 H 0.082 0.918 12 C -0.134 4.134 13 C -0.257 4.257 14 S -0.032 6.032 15 C -0.207 4.207 16 C -0.184 4.184 17 C 0.053 3.947 18 H 0.068 0.932 19 O -0.384 6.384 20 H 0.073 0.927 21 H 0.026 0.974 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.152 0.848 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 15.045 -9.043 -0.055 17.553 hybrid contribution -0.187 1.961 0.853 2.147 sum 14.858 -7.082 0.798 16.479 Atomic orbital electron populations 1.70065 1.08070 1.27873 1.53256 1.25929 0.95526 1.03202 0.94602 0.85713 0.79395 0.78925 0.78900 1.19744 1.21014 1.17513 1.21506 0.91967 0.93014 1.49239 0.94358 1.19336 0.93232 0.94127 0.96051 1.20778 0.93177 0.97470 0.97372 0.91769 1.21081 1.01328 0.93139 0.97826 1.22589 1.00058 0.98164 1.04928 1.85958 1.21360 1.36301 1.59607 1.23336 0.99360 0.99639 0.98339 1.22273 1.00875 0.92391 1.02818 1.22339 0.92475 0.86621 0.93310 0.93169 1.86680 1.29184 1.54645 1.67939 0.92698 0.97438 0.96496 0.92513 0.90398 0.90891 0.89193 0.84847 0.89527 0.90867 0.87830 0.76445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 2 C 0.00 0.22 5.47 84.65 0.46 0.69 16 3 Si 0.95 46.16 27.47 68.60 1.88 48.05 16 4 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 6 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 7 C -0.52 -30.13 8.53 25.60 0.22 -29.91 16 8 H 0.04 2.41 7.72 -2.91 -0.02 2.39 16 9 C 0.01 0.48 2.88 29.85 0.09 0.57 16 10 C -0.07 -2.66 1.77 -11.78 -0.02 -2.68 16 11 H 0.06 2.51 6.70 -2.38 -0.02 2.50 16 12 C -0.09 -3.56 5.02 29.31 0.15 -3.42 16 13 C -0.11 -3.61 5.44 71.75 0.39 -3.22 16 14 S -0.26 -7.02 21.73 -56.49 -1.23 -8.24 16 15 C -0.06 -1.20 6.23 71.13 0.44 -0.76 16 16 C -0.14 -3.00 4.60 30.42 0.14 -2.86 16 17 C 0.11 3.18 2.94 31.34 0.09 3.27 16 18 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 19 O -0.58 -17.09 11.77 -148.98 -1.75 -18.85 16 20 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 21 H 0.01 0.35 7.20 -2.38 -0.02 0.34 16 22 H 0.02 0.84 6.89 -2.39 -0.02 0.82 16 23 H 0.06 2.58 6.71 -2.39 -0.02 2.56 16 24 H 0.08 2.77 6.52 -2.39 -0.02 2.76 16 25 H 0.07 2.53 6.79 -4.59 -0.03 2.50 16 26 H 0.09 3.03 8.14 -4.70 -0.04 2.99 16 27 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 1.78 8.05 -2.39 -0.02 1.76 16 29 H 0.07 1.72 6.83 -2.39 -0.02 1.70 16 30 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.39 7.07 9.06 -74.06 -0.67 6.40 16 Total: -1.00 -68.83 251.89 1.52 -67.31 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.36 Total: 10.36 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 1.96 Total: -38.32 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.30 Total: -60.31 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -1.75 Total: -18.85 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.88 Total: 48.05 kcal Atomic # 16 Polarization: -7.02 SS G_CDS: -1.23 Total: -8.24 kcal Total: -68.83 1.52 -67.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234913.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.068 kcal (2) G-P(sol) polarization free energy of solvation -68.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds