Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 H 1.09004 * 108.19171 * 305.00144 * 10 9 7 12 12 C 1.44821 * 108.29325 * 62.16607 * 10 9 7 13 13 C 1.55279 * 110.42834 * 185.78130 * 12 10 9 14 14 S 1.79266 * 109.55093 * 286.48646 * 13 12 10 15 15 C 1.82339 * 106.79995 * 88.70723 * 14 13 12 16 16 C 1.54626 * 110.93314 * 319.07686 * 15 14 13 17 17 C 1.51408 * 109.12609 * 320.75427 * 16 15 14 18 18 H 1.08993 * 110.32827 * 346.56374 * 17 16 15 19 19 O 1.42902 * 110.32642 * 224.30306 * 17 16 15 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 22 22 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 23 23 H 1.08996 * 109.31131 * 305.91580 * 12 10 9 24 24 H 1.08997 * 109.30465 * 65.31540 * 12 10 9 25 25 H 1.09000 * 109.46457 * 166.49441 * 13 12 10 26 26 H 1.08998 * 109.51345 * 46.51526 * 13 12 10 27 27 H 1.09003 * 109.17905 * 198.70974 * 15 14 13 28 28 H 1.08995 * 109.14563 * 79.43094 * 15 14 13 29 29 H 1.09001 * 109.52767 * 200.85712 * 16 15 14 30 30 H 1.08994 * 109.58232 * 80.68758 * 16 15 14 31 31 H 0.96705 * 113.99517 * 64.41737 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 1 2.9176 -3.5349 -0.8488 12 6 3.0284 -3.5905 1.2154 13 6 4.1519 -4.6622 1.2002 14 16 3.4377 -6.2841 1.4702 15 6 2.9829 -6.9393 -0.1695 16 6 2.3597 -5.8338 -1.0528 17 6 1.4628 -4.9630 -0.1985 18 1 1.2744 -5.4415 0.7625 19 8 0.2315 -4.7035 -0.8758 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5570 0.8898 22 1 0.6239 -2.5567 -0.8903 23 1 3.4783 -2.6011 1.2966 24 1 2.3778 -3.7588 2.0736 25 1 4.8706 -4.4463 1.9908 26 1 4.6584 -4.6451 0.2351 27 1 2.2618 -7.7472 -0.0449 28 1 3.8756 -7.3284 -0.6591 29 1 1.7723 -6.2913 -1.8489 30 1 3.1515 -5.2245 -1.4884 31 1 -0.3068 -5.4922 -1.0290 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = -62.922430 kcal Electronic energy + Delta-G solvation = -13249.547856 eV Core-core repulsion = 11042.677383 eV Total energy + Delta-G solvation = -2206.870473 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.54720 -34.87206 -32.97117 -32.05818 -29.37536 -26.47944 -24.25049 -22.44183 -21.35815 -19.34093 -17.09782 -16.40098 -15.73426 -14.67186 -14.61164 -14.16136 -13.92418 -13.63948 -13.02256 -12.69216 -12.38512 -12.04519 -11.31331 -11.23324 -10.98476 -10.83792 -10.77281 -10.41065 -10.21283 -9.84054 -9.47485 -9.42943 -8.94563 -8.79726 -8.25376 -7.33618 -5.91060 -3.93096 1.84565 2.85627 3.34376 3.40922 3.43185 4.50464 4.63403 4.91126 5.11526 5.22493 5.27346 5.42274 5.46438 5.52492 5.70422 5.79465 5.83451 6.15168 6.25450 6.49014 6.66612 6.86079 7.06235 7.26612 7.82310 8.03413 8.19432 8.25434 8.52479 9.16220 9.69135 11.19749 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.043149 B = 0.008730 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.760075 B = 3206.736409 C = 3629.998722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.036 3.964 10 C -0.088 4.088 11 H 0.055 0.945 12 C -0.095 4.095 13 C -0.091 4.091 14 S -0.275 6.275 15 C -0.079 4.079 16 C -0.158 4.158 17 C 0.098 3.902 18 H 0.076 0.924 19 O -0.544 6.544 20 H 0.259 0.741 21 H 0.013 0.987 22 H 0.033 0.967 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.614 -12.530 0.067 13.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.001 4.001 10 C -0.106 4.106 11 H 0.073 0.927 12 C -0.134 4.134 13 C -0.239 4.239 14 S -0.049 6.049 15 C -0.227 4.227 16 C -0.197 4.197 17 C 0.038 3.962 18 H 0.094 0.906 19 O -0.347 6.347 20 H 0.068 0.932 21 H 0.032 0.968 22 H 0.052 0.948 23 H 0.112 0.888 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.598 -12.281 1.020 13.535 hybrid contribution 0.540 0.970 -1.287 1.699 sum 6.138 -11.311 -0.267 12.872 Atomic orbital electron populations 1.69992 1.05960 1.26267 1.50830 1.25008 0.94777 0.98976 0.95623 0.86696 0.79866 0.84028 0.77996 1.20765 1.20036 1.21298 1.21352 0.92709 0.91434 1.50439 0.92877 1.19014 0.93343 0.89504 0.98245 1.19916 0.97867 0.95514 0.97354 0.92713 1.20685 0.95418 0.98130 0.99125 1.23827 1.01357 0.93784 1.04921 1.85984 1.81256 1.22166 1.15457 1.23873 1.03329 1.00339 0.95188 1.22902 1.00990 0.97137 0.98674 1.21896 0.84058 0.96275 0.93963 0.90632 1.86826 1.32097 1.35520 1.80283 0.93174 0.96810 0.94834 0.88833 0.91376 0.88361 0.90277 0.88397 0.90436 0.90621 0.90761 0.79630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.52 -14.73 8.22 -34.44 -0.28 -15.01 16 8 H 0.05 1.44 6.77 -52.49 -0.36 1.08 16 9 C 0.04 0.95 3.87 -27.89 -0.11 0.84 16 10 C -0.09 -1.80 1.49 -94.41 -0.14 -1.95 16 11 H 0.05 1.15 6.67 -51.93 -0.35 0.80 16 12 C -0.09 -1.75 4.57 -29.35 -0.13 -1.89 16 13 C -0.09 -1.35 5.95 38.37 0.23 -1.12 16 14 S -0.28 -3.94 20.08 -107.50 -2.16 -6.10 16 15 C -0.08 -0.96 6.60 38.01 0.25 -0.71 16 16 C -0.16 -2.20 5.49 -26.68 -0.15 -2.35 16 17 C 0.10 1.70 3.06 -27.50 -0.08 1.61 16 18 H 0.08 1.30 6.22 -51.93 -0.32 0.98 16 19 O -0.54 -10.16 11.22 -35.23 -0.40 -10.56 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.03 0.98 6.90 -51.93 -0.36 0.63 16 23 H 0.09 1.88 6.25 -51.93 -0.32 1.55 16 24 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 25 H 0.10 1.32 8.14 -51.76 -0.42 0.90 16 26 H 0.08 1.13 7.88 -51.76 -0.41 0.72 16 27 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.93 7.96 -51.93 -0.41 0.52 16 30 H 0.07 1.11 6.55 -51.93 -0.34 0.77 16 31 H 0.36 4.70 9.11 45.56 0.42 5.11 16 LS Contribution 253.43 15.07 3.82 3.82 Total: -1.00 -31.64 253.43 -7.23 -38.88 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.70 Total: 2.79 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -0.51 Total: -18.99 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.74 Total: -26.68 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.40 Total: -10.56 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -2.16 Total: -6.10 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.64 -7.23 -38.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.047 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds