Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 H 1.09004 * 108.19171 * 305.00144 * 10 9 7 12 12 C 1.44821 * 108.29325 * 62.16607 * 10 9 7 13 13 C 1.55279 * 110.42834 * 185.78130 * 12 10 9 14 14 S 1.79266 * 109.55093 * 286.48646 * 13 12 10 15 15 C 1.82339 * 106.79995 * 88.70723 * 14 13 12 16 16 C 1.54626 * 110.93314 * 319.07686 * 15 14 13 17 17 C 1.51408 * 109.12609 * 320.75427 * 16 15 14 18 18 H 1.08993 * 110.32827 * 346.56374 * 17 16 15 19 19 O 1.42902 * 110.32642 * 224.30306 * 17 16 15 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 22 22 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 23 23 H 1.08996 * 109.31131 * 305.91580 * 12 10 9 24 24 H 1.08997 * 109.30465 * 65.31540 * 12 10 9 25 25 H 1.09000 * 109.46457 * 166.49441 * 13 12 10 26 26 H 1.08998 * 109.51345 * 46.51526 * 13 12 10 27 27 H 1.09003 * 109.17905 * 198.70974 * 15 14 13 28 28 H 1.08995 * 109.14563 * 79.43094 * 15 14 13 29 29 H 1.09001 * 109.52767 * 200.85712 * 16 15 14 30 30 H 1.08994 * 109.58232 * 80.68758 * 16 15 14 31 31 H 0.96705 * 113.99517 * 64.41737 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 1 2.9176 -3.5349 -0.8488 12 6 3.0284 -3.5905 1.2154 13 6 4.1519 -4.6622 1.2002 14 16 3.4377 -6.2841 1.4702 15 6 2.9829 -6.9393 -0.1695 16 6 2.3597 -5.8338 -1.0528 17 6 1.4628 -4.9630 -0.1985 18 1 1.2744 -5.4415 0.7625 19 8 0.2315 -4.7035 -0.8758 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5570 0.8898 22 1 0.6239 -2.5567 -0.8903 23 1 3.4783 -2.6011 1.2966 24 1 2.3778 -3.7588 2.0736 25 1 4.8706 -4.4463 1.9908 26 1 4.6584 -4.6451 0.2351 27 1 2.2618 -7.7472 -0.0449 28 1 3.8756 -7.3284 -0.6591 29 1 1.7723 -6.2913 -1.8489 30 1 3.1515 -5.2245 -1.4884 31 1 -0.3068 -5.4922 -1.0290 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = -84.739703 kcal Electronic energy + Delta-G solvation = -13250.493924 eV Core-core repulsion = 11042.677383 eV Total energy + Delta-G solvation = -2207.816541 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.04186 -36.45237 -34.82529 -33.52304 -31.08140 -28.15766 -25.78207 -24.17555 -22.72291 -20.98680 -18.60502 -18.39538 -16.96976 -16.59520 -16.02864 -15.60685 -15.30177 -14.80856 -14.42549 -14.35547 -14.01881 -13.57598 -13.07571 -12.81620 -12.66228 -12.57985 -12.32211 -12.10024 -11.89899 -11.38865 -11.10817 -10.87259 -10.81006 -10.50363 -10.44168 -8.47796 -8.14992 -6.25530 0.77365 1.38344 1.40074 1.50480 1.75797 2.41561 3.17033 3.38564 3.71805 3.91115 3.99956 4.06434 4.19550 4.34067 4.51596 4.60383 4.73050 4.80398 4.91810 5.05857 5.20450 5.25070 5.32502 5.50388 5.64297 5.87913 5.99278 6.29615 6.89626 7.14238 7.42174 8.96786 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.043149 B = 0.008730 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.760075 B = 3206.736409 C = 3629.998722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.285 1.285 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.046 3.954 10 C -0.078 4.078 11 H 0.050 0.950 12 C -0.092 4.092 13 C -0.079 4.079 14 S -0.291 6.291 15 C -0.069 4.069 16 C -0.149 4.149 17 C 0.100 3.900 18 H 0.079 0.921 19 O -0.576 6.576 20 H 0.260 0.740 21 H -0.023 1.023 22 H -0.004 1.004 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -13.630 -0.270 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.186 1.186 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.008 3.992 10 C -0.097 4.097 11 H 0.069 0.931 12 C -0.131 4.131 13 C -0.227 4.227 14 S -0.064 6.064 15 C -0.216 4.216 16 C -0.188 4.188 17 C 0.040 3.960 18 H 0.096 0.904 19 O -0.383 6.383 20 H 0.069 0.931 21 H -0.005 1.005 22 H 0.014 0.986 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.133 0.867 26 H 0.107 0.893 27 H 0.138 0.862 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.352 -13.413 0.683 15.311 hybrid contribution -0.090 1.274 -1.194 1.749 sum 7.262 -12.139 -0.511 14.154 Atomic orbital electron populations 1.70151 1.07907 1.27376 1.52060 1.26001 0.95693 1.03310 0.95160 0.85509 0.78714 0.78753 0.78448 1.19776 1.18596 1.21044 1.21784 0.93381 0.92385 1.49755 0.91875 1.18815 0.93747 0.92037 0.94555 1.19889 0.96736 0.94919 0.98142 0.93126 1.20524 0.96294 0.98786 0.97503 1.23633 0.99906 0.92929 1.06269 1.86091 1.81400 1.21158 1.17784 1.23948 1.04753 0.99765 0.93174 1.22713 1.00194 0.97068 0.98852 1.21852 0.84109 0.94964 0.95046 0.90380 1.86762 1.33170 1.37957 1.80444 0.93087 1.00499 0.98586 0.90899 0.92723 0.86673 0.89256 0.86211 0.88119 0.88417 0.91584 0.76874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.26 13.29 21.45 0.28 -58.97 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.54 -30.98 8.22 25.60 0.21 -30.77 16 8 H 0.06 3.44 6.77 -2.91 -0.02 3.42 16 9 C 0.05 2.52 3.87 29.85 0.12 2.64 16 10 C -0.08 -3.25 1.49 -13.25 -0.02 -3.27 16 11 H 0.05 2.12 6.67 -2.38 -0.02 2.10 16 12 C -0.09 -3.41 4.57 28.90 0.13 -3.28 16 13 C -0.08 -2.21 5.95 72.76 0.43 -1.78 16 14 S -0.29 -7.61 20.08 -56.49 -1.13 -8.74 16 15 C -0.07 -1.40 6.60 72.54 0.48 -0.92 16 16 C -0.15 -3.76 5.49 30.63 0.17 -3.59 16 17 C 0.10 3.39 3.06 30.10 0.09 3.49 16 18 H 0.08 2.62 6.22 -2.39 -0.01 2.60 16 19 O -0.58 -21.64 11.22 -148.98 -1.67 -23.31 16 20 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 21 H -0.02 -1.44 8.14 -2.38 -0.02 -1.46 16 22 H 0.00 -0.26 6.90 -2.39 -0.02 -0.28 16 23 H 0.07 2.97 6.25 -2.39 -0.01 2.96 16 24 H 0.05 2.15 8.09 -2.39 -0.02 2.13 16 25 H 0.12 2.83 8.14 -2.50 -0.02 2.81 16 26 H 0.09 2.32 7.88 -2.50 -0.02 2.31 16 27 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.10 2.08 7.96 -2.39 -0.02 2.06 16 30 H 0.07 1.80 6.55 -2.39 -0.02 1.78 16 31 H 0.38 9.69 9.11 -74.05 -0.67 9.02 16 Total: -1.00 -70.31 253.43 2.02 -68.29 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.44 Total: 12.71 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 2.07 Total: -37.29 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.28 Total: -58.97 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -1.67 Total: -23.31 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.13 Total: -8.74 kcal Total: -70.31 2.02 -68.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.449 kcal (2) G-P(sol) polarization free energy of solvation -70.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds