Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.50703 * 109.47211 * 120.00993 * 2 1 3 13 13 C 1.33988 * 126.90691 * 59.67781 * 12 2 1 14 14 O 1.34455 * 110.15094 * 179.83326 * 13 12 2 15 15 C 1.34806 * 110.89036 * 0.45641 * 14 13 12 16 16 C 1.38935 * 133.49995 * 179.69268 * 15 14 13 17 17 C 1.37842 * 119.81974 * 180.02562 * 16 15 14 18 18 C 1.38738 * 120.68929 * 0.02562 * 17 16 15 19 19 C 1.36741 * 120.41639 * 359.94021 * 18 17 16 20 20 C 1.39408 * 119.71058 * 0.06970 * 19 18 17 21 21 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 23 23 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 24 24 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 25 25 H 1.07998 * 124.92659 * 0.02562 * 13 12 2 26 26 H 1.08005 * 120.08958 * 0.02562 * 16 15 14 27 27 H 1.08008 * 119.65802 * 179.97438 * 17 16 15 28 28 H 1.07999 * 119.79850 * 179.97438 * 18 17 16 29 29 H 1.08002 * 120.14380 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 6 2.0324 -0.7106 1.2304 13 6 1.7907 -1.9811 1.5808 14 8 2.4073 -2.2669 2.7409 15 6 3.0736 -1.1923 3.2086 16 6 3.8465 -0.9644 4.3404 17 6 4.4110 0.2762 4.5465 18 6 4.2155 1.3034 3.6346 19 6 3.4589 1.0997 2.5140 20 6 2.8798 -0.1483 2.2888 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8899 24 1 1.9030 -0.5275 -4.4376 25 1 1.1903 -2.6758 1.0123 26 1 4.0047 -1.7570 5.0567 27 1 5.0110 0.4506 5.4274 28 1 4.6642 2.2699 3.8106 29 1 3.3099 1.9023 1.8069 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243740.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = 6.187713 kcal Electronic energy + Delta-G solvation = -13878.186556 eV Core-core repulsion = 11538.868972 eV Total energy + Delta-G solvation = -2339.317584 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.27553 -38.68392 -36.98076 -34.11270 -32.16937 -31.17362 -29.70178 -27.11705 -24.42925 -23.85889 -23.09580 -20.50279 -18.86928 -18.04524 -17.73420 -16.98226 -16.61470 -16.41787 -15.08734 -14.93693 -14.84882 -14.56033 -14.14361 -13.60424 -13.25768 -13.13734 -12.93056 -12.76477 -12.37546 -11.92122 -11.78493 -11.31986 -11.28921 -10.78881 -10.62298 -9.51407 -8.93523 -8.31031 -6.36128 0.07370 0.47929 1.30537 1.36360 1.47021 1.57710 1.98637 2.31368 2.84862 3.03936 3.68261 3.77474 4.14629 4.22936 4.32530 4.49966 4.55974 4.60396 4.75544 4.81544 4.85567 5.05329 5.14632 5.36967 5.43522 5.52094 5.55988 5.63227 5.70048 5.86472 6.25239 6.36629 6.69292 7.28742 8.85463 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.041359 B = 0.008839 C = 0.008191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.839024 B = 3167.050596 C = 3417.624335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 H 0.028 0.972 4 C -0.513 4.513 5 H 0.032 0.968 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.262 1.262 10 H -0.298 1.298 11 H -0.249 1.249 12 C -0.152 4.152 13 C -0.013 4.013 14 O -0.207 6.207 15 C 0.021 3.979 16 C -0.115 4.115 17 C -0.090 4.090 18 C -0.134 4.134 19 C -0.091 4.091 20 C -0.156 4.156 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.267 0.733 25 H 0.217 0.783 26 H 0.155 0.845 27 H 0.176 0.824 28 H 0.159 0.841 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 4.150 15.903 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.055 3.945 3 H 0.046 0.954 4 C -0.551 4.551 5 H 0.050 0.950 6 C -0.182 4.182 7 N -0.588 5.588 8 Si 0.777 3.223 9 H -0.187 1.187 10 H -0.226 1.226 11 H -0.173 1.173 12 C -0.153 4.153 13 C -0.077 4.077 14 O -0.109 6.109 15 C -0.026 4.026 16 C -0.133 4.133 17 C -0.107 4.107 18 C -0.152 4.152 19 C -0.110 4.110 20 C -0.156 4.156 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.233 0.767 26 H 0.172 0.828 27 H 0.193 0.807 28 H 0.177 0.823 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.789 3.889 15.860 16.349 hybrid contribution -0.452 0.299 -1.184 1.302 sum 0.336 4.188 14.675 15.265 Atomic orbital electron populations 1.22084 0.96367 1.01651 0.99629 1.17559 0.93041 0.94963 0.88939 0.95379 1.21199 1.31192 1.12480 0.90210 0.95004 1.25847 0.97217 0.99954 0.95204 1.70038 1.47559 1.42522 0.98644 0.85817 0.79295 0.79903 0.77237 1.18740 1.22611 1.17332 1.21426 1.01455 0.95363 0.97089 1.23872 1.00328 0.97389 0.86103 1.83926 1.55675 1.36210 1.35081 1.20219 0.99127 0.85333 0.97932 1.20355 0.98438 0.99950 0.94603 1.21387 0.98414 0.90641 1.00262 1.21148 0.99167 1.01255 0.93618 1.20579 0.97023 0.94702 0.98651 1.20309 1.02558 0.96690 0.96090 0.92264 0.92377 0.94494 0.92406 0.76668 0.82782 0.80704 0.82303 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 8.56 71.98 0.62 -5.24 15 2 C 0.07 3.53 2.30 -12.28 -0.03 3.50 15 3 H 0.03 1.37 7.20 -2.39 -0.02 1.35 15 4 C -0.51 -29.48 9.00 25.60 0.23 -29.25 15 5 H 0.03 2.04 7.97 -2.92 -0.02 2.02 15 6 C 0.02 0.87 5.45 84.65 0.46 1.33 15 7 N -0.95 -59.26 13.96 21.45 0.30 -58.96 15 8 Si 0.95 44.66 24.37 68.60 1.67 46.33 15 9 H -0.26 -11.54 6.87 99.48 0.68 -10.86 15 10 H -0.30 -13.98 7.11 99.48 0.71 -13.27 15 11 H -0.25 -10.92 6.53 99.48 0.65 -10.27 15 12 C -0.15 -6.69 5.02 -18.60 -0.09 -6.78 15 13 C -0.01 -0.54 11.43 66.85 0.76 0.23 15 14 O -0.21 -7.89 10.58 -8.95 -0.09 -7.99 15 15 C 0.02 0.75 7.42 22.99 0.17 0.92 15 16 C -0.12 -3.05 10.07 22.34 0.22 -2.82 15 17 C -0.09 -1.92 10.01 22.30 0.22 -1.69 15 18 C -0.13 -3.27 9.98 22.04 0.22 -3.05 15 19 C -0.09 -3.05 10.05 22.20 0.22 -2.82 15 20 C -0.16 -6.16 6.38 -20.21 -0.13 -6.29 15 21 H 0.06 2.36 8.03 -2.39 -0.02 2.34 15 22 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 23 H 0.04 1.56 3.27 -2.39 -0.01 1.56 15 24 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 25 H 0.22 7.78 8.06 -2.91 -0.02 7.76 15 26 H 0.15 3.10 8.06 -2.91 -0.02 3.08 15 27 H 0.18 2.13 8.06 -2.91 -0.02 2.11 15 28 H 0.16 2.69 8.06 -2.91 -0.02 2.67 15 29 H 0.12 3.97 8.06 -2.91 -0.02 3.95 15 Total: -1.00 -69.08 248.29 5.82 -63.25 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.07 Total: 9.32 kcal Atomic # 6 Polarization: -54.85 SS G_CDS: 2.88 Total: -51.96 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.30 Total: -58.96 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.09 Total: -7.99 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.67 Total: 46.33 kcal Total: -69.08 5.82 -63.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243740.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.442 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds