Wall clock time and date at job start Mon Mar 30 2020 02:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47028 * 2 1 4 4 C 1.42899 * 114.00027 * 175.26403 * 3 2 1 5 5 C 1.50697 * 109.31002 * 64.83605 * 4 3 2 6 6 H 1.08001 * 120.00056 * 234.24256 * 5 4 3 7 7 C 1.37884 * 120.00231 * 54.23904 * 5 4 3 8 8 N 1.31515 * 119.99986 * 4.81983 * 7 5 4 9 9 Si 1.86799 * 119.99915 * 184.82219 * 7 5 4 10 10 H 1.48493 * 109.47532 * 59.99875 * 9 7 5 11 11 H 1.48504 * 109.46922 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47001 * 299.99559 * 9 7 5 13 13 C 1.52582 * 109.38993 * 184.58345 * 4 3 2 14 14 C 1.52588 * 110.72412 * 49.47806 * 13 4 3 15 15 C 1.53096 * 109.95883 * 70.67230 * 14 13 4 16 16 S 1.81746 * 108.84007 * 296.97601 * 15 14 13 17 17 C 1.53099 * 109.39061 * 305.08159 * 4 3 2 18 18 H 1.09003 * 109.47460 * 300.00207 * 1 2 3 19 19 H 1.09003 * 109.47269 * 60.00036 * 1 2 3 20 20 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47299 * 239.99859 * 2 1 3 22 22 H 1.08999 * 109.47251 * 119.99208 * 2 1 3 23 23 H 0.96995 * 120.00292 * 180.02562 * 8 7 5 24 24 H 1.08996 * 109.22875 * 289.15429 * 13 4 3 25 25 H 1.09003 * 109.22431 * 169.79267 * 13 4 3 26 26 H 1.09001 * 109.38878 * 190.82472 * 14 13 4 27 27 H 1.09005 * 109.38625 * 310.61773 * 14 13 4 28 28 H 1.08993 * 109.57401 * 56.78331 * 15 14 13 29 29 H 1.09001 * 109.57483 * 177.16682 * 15 14 13 30 30 H 1.08992 * 109.57459 * 183.06996 * 17 4 3 31 31 H 1.09002 * 109.67784 * 62.74545 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4266 1.4616 0.1078 5 6 4.0691 0.8635 -1.1171 6 1 4.8215 0.0959 -1.0120 7 6 3.6963 1.2962 -2.3721 8 7 2.8507 2.2954 -2.4989 9 14 4.3922 0.4629 -3.8923 10 1 4.0199 -0.9745 -3.8831 11 1 3.8379 1.1096 -5.1088 12 1 5.8717 0.5911 -3.8934 13 6 3.8097 2.9349 0.2124 14 6 2.9727 3.6360 1.2783 15 6 3.3928 3.1581 2.6707 16 16 3.0497 1.3786 2.8088 17 6 3.9043 0.7078 1.3518 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5137 0.8900 23 1 2.5881 2.5996 -3.3818 24 1 3.6433 3.4183 -0.7502 25 1 4.8646 3.0136 0.4753 26 1 3.1222 4.7133 1.2051 27 1 1.9191 3.4054 1.1206 28 1 4.4587 3.3365 2.8119 29 1 2.8265 3.6991 3.4288 30 1 4.9802 0.8384 1.4672 31 1 3.6740 -0.3527 1.2493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258537.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:26 Heat of formation + Delta-G solvation = -70.173954 kcal Electronic energy + Delta-G solvation = -13777.244631 eV Core-core repulsion = 11570.059708 eV Total energy + Delta-G solvation = -2207.184923 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.53055 -35.80001 -34.37824 -32.12757 -30.79307 -27.91904 -27.07492 -23.72981 -22.55184 -21.00856 -18.94985 -17.04591 -16.90353 -16.48955 -15.95861 -15.58611 -15.36603 -14.46879 -13.91987 -13.89853 -13.76354 -13.35015 -13.06369 -12.87449 -12.65132 -12.38091 -12.22082 -12.15109 -11.92341 -11.77506 -11.45600 -10.75106 -10.53677 -10.39453 -9.65459 -8.45969 -8.00129 -6.27273 1.04714 1.40024 1.41964 1.47776 1.75076 2.42718 3.15423 3.58569 4.09893 4.16366 4.24699 4.35168 4.42299 4.55797 4.69081 4.75815 4.80368 4.84604 4.95143 4.97540 5.13974 5.33556 5.42067 5.50665 5.63453 5.74770 5.98766 6.24411 6.70687 7.20579 7.50653 8.95346 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.032720 B = 0.012978 C = 0.011344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.538887 B = 2157.027346 C = 2467.565554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.071 3.929 3 O -0.367 6.367 4 C 0.238 3.762 5 C -0.572 4.572 6 H 0.048 0.952 7 C 0.047 3.953 8 N -0.874 5.874 9 Si 0.938 3.062 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 C -0.101 4.101 14 C -0.110 4.110 15 C -0.062 4.062 16 S -0.301 6.301 17 C -0.087 4.087 18 H 0.058 0.942 19 H 0.042 0.958 20 H 0.080 0.920 21 H 0.016 0.984 22 H 0.030 0.970 23 H 0.259 0.741 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -0.098 6.295 6.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.006 4.006 3 O -0.286 6.286 4 C 0.197 3.803 5 C -0.611 4.611 6 H 0.066 0.934 7 C -0.157 4.157 8 N -0.510 5.510 9 Si 0.764 3.236 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.197 1.197 13 C -0.139 4.139 14 C -0.149 4.149 15 C -0.210 4.210 16 S -0.074 6.074 17 C -0.235 4.235 18 H 0.077 0.923 19 H 0.062 0.938 20 H 0.099 0.901 21 H 0.034 0.966 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.094 0.906 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.182 -0.353 6.986 7.094 hybrid contribution 1.315 -0.171 -2.045 2.437 sum 0.133 -0.523 4.941 4.970 Atomic orbital electron populations 1.21627 0.93871 1.02014 1.01609 1.21997 0.94797 0.86364 0.97461 1.87877 1.22578 1.24201 1.93936 1.18901 0.79890 0.92318 0.89154 1.21658 1.24281 1.23025 0.92129 0.93396 1.25505 0.94624 0.94687 1.00908 1.70090 1.32325 1.25237 1.23366 0.85955 0.78917 0.79010 0.79748 1.20141 1.21004 1.19713 1.21330 0.96871 0.95956 0.99729 1.21572 1.00828 0.99755 0.92735 1.23420 1.04623 0.92135 1.00833 1.86146 1.75633 1.09567 1.36033 1.24202 1.01288 1.02737 0.95305 0.92253 0.93835 0.90110 0.96607 0.95149 0.93190 0.91173 0.93599 0.90770 0.92184 0.89478 0.86512 0.90557 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 10.28 71.98 0.74 -4.14 16 2 C 0.07 3.13 5.92 71.98 0.43 3.56 16 3 O -0.37 -18.02 7.42 -148.98 -1.10 -19.12 16 4 C 0.24 11.30 0.30 -11.65 0.00 11.30 16 5 C -0.57 -30.03 7.03 25.60 0.18 -29.85 16 6 H 0.05 2.51 7.75 -2.91 -0.02 2.49 16 7 C 0.05 2.49 5.20 84.66 0.44 2.93 16 8 N -0.87 -48.38 10.94 21.45 0.23 -48.15 16 9 Si 0.94 42.29 29.54 68.60 2.03 44.31 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 C -0.10 -4.57 4.63 30.32 0.14 -4.43 16 14 C -0.11 -4.15 5.66 30.49 0.17 -3.98 16 15 C -0.06 -1.99 6.46 72.01 0.46 -1.53 16 16 S -0.30 -11.15 21.70 -56.49 -1.23 -12.38 16 17 C -0.09 -3.63 4.60 72.02 0.33 -3.30 16 18 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 19 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 20 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 21 H 0.02 0.76 7.44 -2.39 -0.02 0.74 16 22 H 0.03 1.28 6.01 -2.39 -0.01 1.27 16 23 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 24 H 0.07 3.64 6.12 -2.39 -0.01 3.63 16 25 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 26 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.06 2.54 7.15 -2.38 -0.02 2.53 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.09 3.63 6.55 -2.39 -0.02 3.62 16 Total: -1.00 -57.07 255.41 3.92 -53.15 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.09 Total: 11.62 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 2.89 Total: -29.44 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.23 Total: -48.15 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.10 Total: -19.12 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -11.15 SS G_CDS: -1.23 Total: -12.38 kcal Total: -57.07 3.92 -53.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258537.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.020 kcal (2) G-P(sol) polarization free energy of solvation -57.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds