Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99557 * 2 1 4 4 C 1.50696 * 108.69694 * 305.25608 * 3 2 1 5 5 H 1.07996 * 120.00023 * 125.73662 * 4 3 2 6 6 C 1.37877 * 120.00374 * 305.74273 * 4 3 2 7 7 N 1.31516 * 119.99665 * 4.91505 * 6 4 3 8 8 Si 1.86796 * 120.00231 * 184.91735 * 6 4 3 9 9 H 1.48498 * 109.47208 * 60.00259 * 8 6 4 10 10 H 1.48497 * 109.47099 * 299.99624 * 8 6 4 11 11 H 1.48501 * 109.46840 * 179.97438 * 8 6 4 12 12 C 1.44529 * 108.72904 * 187.04932 * 3 2 1 13 13 C 1.53853 * 113.23947 * 304.92964 * 12 3 2 14 14 C 1.50765 * 108.57036 * 273.57002 * 13 12 3 15 15 S 1.82403 * 111.08352 * 95.91941 * 14 13 12 16 16 C 1.82407 * 105.00266 * 319.17779 * 15 14 13 17 17 C 1.50754 * 111.08977 * 319.18137 * 16 15 14 18 18 H 1.08997 * 109.46932 * 185.30127 * 1 2 3 19 19 H 1.09006 * 109.46955 * 305.29954 * 1 2 3 20 20 H 1.08999 * 109.46767 * 65.29595 * 1 2 3 21 21 H 0.97005 * 120.00406 * 5.42408 * 7 6 4 22 22 H 1.09003 * 108.73196 * 65.89573 * 12 3 2 23 23 H 1.08996 * 108.73319 * 183.95829 * 12 3 2 24 24 H 1.09000 * 109.62405 * 33.29005 * 13 12 3 25 25 H 1.08998 * 109.62599 * 153.66271 * 13 12 3 26 26 H 1.09002 * 109.15744 * 216.32658 * 14 13 12 27 27 H 1.08990 * 109.15392 * 335.50601 * 14 13 12 28 28 H 1.09003 * 109.15283 * 79.59551 * 16 15 14 29 29 H 1.09003 * 109.15132 * 198.81702 * 16 15 14 30 30 H 1.09004 * 109.61606 * 336.17329 * 17 16 15 31 31 H 1.09002 * 109.62023 * 215.64242 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4539 2.0819 -1.1656 5 1 0.9910 3.0438 -1.0021 6 6 1.5358 1.5642 -2.4409 7 7 2.0110 0.3525 -2.6294 8 14 0.9717 2.5839 -3.9009 9 1 1.7700 3.8342 -3.9694 10 1 -0.4655 2.9221 -3.7427 11 1 1.1630 1.8059 -5.1513 12 6 3.4399 1.1771 -0.1680 13 6 4.0943 0.2600 0.8798 14 6 4.4205 1.0823 2.1007 15 16 3.1032 0.9456 3.3550 16 6 1.5440 0.9980 2.4097 17 6 1.6141 2.0200 1.3038 18 1 -0.3633 -1.0232 0.0949 19 1 -0.3633 0.5939 0.8388 20 1 -0.3633 0.4295 -0.9336 21 1 2.2302 -0.2065 -1.8675 22 1 3.6409 0.7736 -1.1604 23 1 3.8910 2.1668 -0.0974 24 1 3.4032 -0.5383 1.1503 25 1 5.0082 -0.1701 0.4702 26 1 5.3593 0.7306 2.5285 27 1 4.5301 2.1268 1.8096 28 1 1.3547 0.0154 1.9773 29 1 0.7263 1.2559 3.0828 30 1 2.3617 2.7743 1.5494 31 1 0.6400 2.4933 1.1804 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = -50.706817 kcal Electronic energy + Delta-G solvation = -14014.727196 eV Core-core repulsion = 11808.386431 eV Total energy + Delta-G solvation = -2206.340764 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.93516 -34.28820 -32.59359 -31.59880 -28.58136 -25.67474 -25.01712 -22.95159 -21.02545 -19.26014 -17.48422 -16.24620 -15.35568 -14.52708 -14.28264 -14.17635 -13.78396 -13.03179 -12.90495 -12.26694 -12.05399 -11.74975 -11.54409 -11.36946 -10.88099 -10.79777 -10.35096 -10.31246 -10.17384 -10.08955 -9.52035 -9.18348 -8.92712 -8.45412 -7.96875 -7.22079 -6.28328 -4.22241 2.24225 3.05179 3.37650 3.39257 3.58011 4.46000 4.99405 5.34996 5.43635 5.47238 5.57799 5.74751 5.87741 6.03030 6.16275 6.27586 6.33097 6.41105 6.46031 6.47260 6.60315 6.82865 6.93586 7.04788 7.17873 7.67152 7.95058 8.26675 8.66609 8.85567 9.59200 11.02657 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.046272 B = 0.011250 C = 0.010579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.970880 B = 2488.215617 C = 2646.166866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.393 6.393 3 C 0.223 3.777 4 C -0.637 4.637 5 H 0.049 0.951 6 C 0.039 3.961 7 N -0.895 5.895 8 Si 1.056 2.944 9 H -0.288 1.288 10 H -0.289 1.289 11 H -0.282 1.282 12 C -0.101 4.101 13 C -0.128 4.128 14 C -0.061 4.061 15 S -0.318 6.318 16 C -0.072 4.072 17 C -0.133 4.133 18 H 0.051 0.949 19 H 0.020 0.980 20 H 0.048 0.952 21 H 0.294 0.706 22 H 0.083 0.917 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 0.870 6.162 6.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.312 6.312 3 C 0.185 3.815 4 C -0.674 4.674 5 H 0.067 0.933 6 C -0.170 4.170 7 N -0.532 5.532 8 Si 0.885 3.115 9 H -0.215 1.215 10 H -0.215 1.215 11 H -0.208 1.208 12 C -0.139 4.139 13 C -0.166 4.166 14 C -0.209 4.209 15 S -0.094 6.094 16 C -0.219 4.219 17 C -0.172 4.172 18 H 0.070 0.930 19 H 0.039 0.961 20 H 0.067 0.933 21 H 0.110 0.890 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.977 0.598 5.610 5.725 hybrid contribution -0.320 0.543 0.435 0.766 sum 0.656 1.141 6.045 6.187 Atomic orbital electron populations 1.22222 0.83599 0.98571 1.00090 1.87759 1.18288 1.31409 1.93764 1.17737 0.90814 0.81243 0.91689 1.22302 1.44765 1.06728 0.93628 0.93275 1.25624 0.94118 0.97405 0.99872 1.70625 1.37113 1.07967 1.37488 0.83747 0.76265 0.75257 0.76229 1.21476 1.21522 1.20754 1.20340 0.95522 0.98060 0.99974 1.21675 1.01046 0.99257 0.94640 1.23202 0.96986 1.03542 0.97149 1.86329 1.04990 1.97636 1.20401 1.23374 0.93463 1.05913 0.99173 1.22131 1.02164 0.97335 0.95584 0.93021 0.96141 0.93299 0.89045 0.89879 0.92563 0.90153 0.91967 0.89362 0.90349 0.87549 0.90022 0.92022 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.11 9.51 101.05 0.96 2.07 16 2 O -0.39 -9.17 5.35 -35.23 -0.19 -9.36 16 3 C 0.22 5.13 0.28 -95.28 -0.03 5.10 16 4 C -0.64 -16.55 6.50 -34.44 -0.22 -16.77 16 5 H 0.05 1.30 7.65 -52.49 -0.40 0.90 16 6 C 0.04 1.04 4.56 -17.82 -0.08 0.96 16 7 N -0.89 -25.33 12.59 55.43 0.70 -24.63 16 8 Si 1.06 24.05 29.91 -169.99 -5.08 18.97 16 9 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.10 -2.24 3.84 -30.24 -0.12 -2.36 16 13 C -0.13 -2.40 5.53 -27.41 -0.15 -2.55 16 14 C -0.06 -1.02 5.76 36.04 0.21 -0.82 16 15 S -0.32 -5.63 21.98 -107.50 -2.36 -7.99 16 16 C -0.07 -1.33 4.79 36.03 0.17 -1.15 16 17 C -0.13 -2.71 4.08 -27.41 -0.11 -2.82 16 18 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 19 H 0.02 0.40 6.10 -51.93 -0.32 0.08 16 20 H 0.05 1.16 6.80 -51.93 -0.35 0.80 16 21 H 0.29 8.35 4.90 -40.82 -0.20 8.15 16 22 H 0.08 2.09 5.65 -51.93 -0.29 1.79 16 23 H 0.06 1.22 7.22 -51.93 -0.37 0.85 16 24 H 0.08 1.63 6.14 -51.93 -0.32 1.31 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.08 1.32 6.85 -51.93 -0.36 0.96 16 28 H 0.11 2.10 4.92 -51.93 -0.26 1.84 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.25 6.96 -51.93 -0.36 0.89 16 31 H 0.07 1.41 7.43 -51.93 -0.39 1.02 16 LS Contribution 239.19 15.07 3.60 3.60 Total: -1.00 -27.31 239.19 -6.81 -34.12 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.10 Total: 3.63 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 0.63 Total: -18.34 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.70 Total: -24.63 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.19 Total: -9.36 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.97 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -2.36 Total: -7.99 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.31 -6.81 -34.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.587 kcal (2) G-P(sol) polarization free energy of solvation -27.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds