Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99557 * 2 1 4 4 C 1.50696 * 108.69694 * 305.25608 * 3 2 1 5 5 H 1.07996 * 120.00023 * 125.73662 * 4 3 2 6 6 C 1.37877 * 120.00374 * 305.74273 * 4 3 2 7 7 N 1.31516 * 119.99665 * 4.91505 * 6 4 3 8 8 Si 1.86796 * 120.00231 * 184.91735 * 6 4 3 9 9 H 1.48498 * 109.47208 * 60.00259 * 8 6 4 10 10 H 1.48497 * 109.47099 * 299.99624 * 8 6 4 11 11 H 1.48501 * 109.46840 * 179.97438 * 8 6 4 12 12 C 1.44529 * 108.72904 * 187.04932 * 3 2 1 13 13 C 1.53853 * 113.23947 * 304.92964 * 12 3 2 14 14 C 1.50765 * 108.57036 * 273.57002 * 13 12 3 15 15 S 1.82403 * 111.08352 * 95.91941 * 14 13 12 16 16 C 1.82407 * 105.00266 * 319.17779 * 15 14 13 17 17 C 1.50754 * 111.08977 * 319.18137 * 16 15 14 18 18 H 1.08997 * 109.46932 * 185.30127 * 1 2 3 19 19 H 1.09006 * 109.46955 * 305.29954 * 1 2 3 20 20 H 1.08999 * 109.46767 * 65.29595 * 1 2 3 21 21 H 0.97005 * 120.00406 * 5.42408 * 7 6 4 22 22 H 1.09003 * 108.73196 * 65.89573 * 12 3 2 23 23 H 1.08996 * 108.73319 * 183.95829 * 12 3 2 24 24 H 1.09000 * 109.62405 * 33.29005 * 13 12 3 25 25 H 1.08998 * 109.62599 * 153.66271 * 13 12 3 26 26 H 1.09002 * 109.15744 * 216.32658 * 14 13 12 27 27 H 1.08990 * 109.15392 * 335.50601 * 14 13 12 28 28 H 1.09003 * 109.15283 * 79.59551 * 16 15 14 29 29 H 1.09003 * 109.15132 * 198.81702 * 16 15 14 30 30 H 1.09004 * 109.61606 * 336.17329 * 17 16 15 31 31 H 1.09002 * 109.62023 * 215.64242 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4539 2.0819 -1.1656 5 1 0.9910 3.0438 -1.0021 6 6 1.5358 1.5642 -2.4409 7 7 2.0110 0.3525 -2.6294 8 14 0.9717 2.5839 -3.9009 9 1 1.7700 3.8342 -3.9694 10 1 -0.4655 2.9221 -3.7427 11 1 1.1630 1.8059 -5.1513 12 6 3.4399 1.1771 -0.1680 13 6 4.0943 0.2600 0.8798 14 6 4.4205 1.0823 2.1007 15 16 3.1032 0.9456 3.3550 16 6 1.5440 0.9980 2.4097 17 6 1.6141 2.0200 1.3038 18 1 -0.3633 -1.0232 0.0949 19 1 -0.3633 0.5939 0.8388 20 1 -0.3633 0.4295 -0.9336 21 1 2.2302 -0.2065 -1.8675 22 1 3.6409 0.7736 -1.1604 23 1 3.8910 2.1668 -0.0974 24 1 3.4032 -0.5383 1.1503 25 1 5.0082 -0.1701 0.4702 26 1 5.3593 0.7306 2.5285 27 1 4.5301 2.1268 1.8096 28 1 1.3547 0.0154 1.9773 29 1 0.7263 1.2559 3.0828 30 1 2.3617 2.7743 1.5494 31 1 0.6400 2.4933 1.1804 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = -65.618266 kcal Electronic energy + Delta-G solvation = -14015.373805 eV Core-core repulsion = 11808.386431 eV Total energy + Delta-G solvation = -2206.987373 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.70032 -35.94169 -34.55412 -33.19558 -30.28601 -27.50919 -26.69411 -24.72786 -22.57484 -21.03911 -19.41031 -17.71956 -17.11792 -16.26815 -15.87251 -15.82327 -15.61586 -14.71690 -14.42420 -13.83183 -13.79505 -13.41841 -13.20039 -13.10489 -12.63916 -12.47292 -12.08931 -11.98115 -11.91777 -11.72820 -11.29389 -10.83168 -10.57639 -10.43660 -9.85284 -8.63782 -8.34843 -6.31708 0.84772 1.53100 1.57343 1.63482 1.77201 2.57589 3.12775 3.54665 3.91797 3.94375 4.10758 4.18112 4.34391 4.40438 4.62682 4.71906 4.75463 4.78108 4.85191 4.89997 4.96023 5.12420 5.22389 5.37008 5.42334 5.87777 5.96538 6.26021 6.73241 6.86770 7.56339 8.92747 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.046272 B = 0.011250 C = 0.010579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.970880 B = 2488.215617 C = 2646.166866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.403 6.403 3 C 0.217 3.783 4 C -0.644 4.644 5 H 0.039 0.961 6 C -0.001 4.001 7 N -0.921 5.921 8 Si 1.095 2.905 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.288 1.288 12 C -0.098 4.098 13 C -0.115 4.115 14 C -0.059 4.059 15 S -0.309 6.309 16 C -0.069 4.069 17 C -0.123 4.123 18 H 0.073 0.927 19 H 0.038 0.962 20 H 0.019 0.981 21 H 0.285 0.715 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 1.242 7.297 7.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.322 6.322 3 C 0.180 3.820 4 C -0.682 4.682 5 H 0.057 0.943 6 C -0.206 4.206 7 N -0.559 5.559 8 Si 0.919 3.081 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.213 1.213 12 C -0.136 4.136 13 C -0.154 4.154 14 C -0.206 4.206 15 S -0.084 6.084 16 C -0.217 4.217 17 C -0.162 4.162 18 H 0.092 0.908 19 H 0.056 0.944 20 H 0.037 0.963 21 H 0.099 0.901 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.135 0.865 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.195 0.979 6.764 6.938 hybrid contribution -0.396 0.429 0.112 0.594 sum 0.800 1.408 6.876 7.064 Atomic orbital electron populations 1.22268 0.82733 1.00106 0.99188 1.87739 1.19263 1.31387 1.93842 1.17788 0.91136 0.81077 0.92029 1.22613 1.44191 1.06424 0.94943 0.94312 1.26683 0.93774 0.97606 1.02489 1.70710 1.39229 1.08875 1.37127 0.83222 0.76748 0.74495 0.73592 1.20166 1.20206 1.21344 1.20245 0.95507 0.98530 0.99332 1.21516 1.01006 0.98316 0.94561 1.23205 0.97940 1.03347 0.96157 1.86325 1.04436 1.97586 1.20061 1.23249 0.95045 1.04420 0.98972 1.21959 1.01715 0.97517 0.94983 0.90810 0.94387 0.96274 0.90055 0.93277 0.92665 0.91558 0.90395 0.86458 0.90170 0.88685 0.88125 0.91899 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.27 9.51 113.37 1.08 3.35 16 2 O -0.40 -18.73 5.35 -148.98 -0.80 -19.53 16 3 C 0.22 9.94 0.28 -13.81 0.00 9.94 16 4 C -0.64 -33.63 6.50 25.60 0.17 -33.46 16 5 H 0.04 2.05 7.65 -2.91 -0.02 2.03 16 6 C 0.00 -0.08 4.56 84.65 0.39 0.31 16 7 N -0.92 -52.97 12.59 21.45 0.27 -52.70 16 8 Si 1.10 48.59 29.91 68.60 2.05 50.64 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 C -0.10 -4.33 3.84 28.32 0.11 -4.22 16 13 C -0.12 -4.16 5.53 30.16 0.17 -3.99 16 14 C -0.06 -1.82 5.76 71.26 0.41 -1.41 16 15 S -0.31 -10.07 21.98 -56.49 -1.24 -11.32 16 16 C -0.07 -2.41 4.79 71.25 0.34 -2.07 16 17 C -0.12 -4.84 4.08 30.15 0.12 -4.72 16 18 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 19 H 0.04 1.44 6.10 -2.38 -0.01 1.42 16 20 H 0.02 0.90 6.80 -2.39 -0.02 0.88 16 21 H 0.29 16.54 4.90 -92.70 -0.45 16.08 16 22 H 0.05 2.50 5.65 -2.39 -0.01 2.49 16 23 H 0.05 2.38 7.22 -2.39 -0.02 2.36 16 24 H 0.07 2.60 6.14 -2.39 -0.01 2.59 16 25 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.08 2.49 6.85 -2.39 -0.02 2.47 16 28 H 0.09 3.58 4.92 -2.39 -0.01 3.57 16 29 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.06 2.44 6.96 -2.38 -0.02 2.43 16 31 H 0.06 2.49 7.43 -2.39 -0.02 2.47 16 Total: -1.00 -57.62 239.19 4.49 -53.13 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.43 Total: 16.05 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 2.78 Total: -36.28 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.27 Total: -52.70 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.80 Total: -19.53 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.05 Total: 50.64 kcal Atomic # 16 Polarization: -10.07 SS G_CDS: -1.24 Total: -11.32 kcal Total: -57.62 4.49 -53.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.486 kcal (2) G-P(sol) polarization free energy of solvation -57.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds