Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86796 * 119.99941 * 2 1 4 4 H 1.48494 * 109.47757 * 270.00073 * 3 2 1 5 5 H 1.48505 * 109.47021 * 30.00392 * 3 2 1 6 6 H 1.48501 * 109.47028 * 149.99989 * 3 2 1 7 7 C 1.39903 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.41295 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.46426 * 126.48011 * 180.02562 * 9 7 2 11 11 C 1.34577 * 107.15681 * 179.73567 * 10 9 7 12 12 N 1.36324 * 108.43296 * 359.97438 * 11 10 9 13 13 C 1.39285 * 125.43732 * 180.02562 * 12 11 10 14 14 N 1.32372 * 119.19498 * 359.73275 * 13 12 11 15 15 C 1.32250 * 120.76020 * 179.75961 * 14 13 12 16 16 C 1.38660 * 119.17098 * 0.50692 * 15 14 13 17 17 C 1.38651 * 118.52023 * 359.74634 * 16 15 14 18 18 N 1.32243 * 119.17429 * 0.02562 * 17 16 15 19 19 N 1.32925 * 126.47559 * 359.68228 * 9 7 2 20 20 H 0.97001 * 120.00311 * 0.02562 * 1 2 3 21 21 H 1.08001 * 126.41432 * 359.75113 * 10 9 7 22 22 H 1.08007 * 125.78114 * 179.97438 * 11 10 9 23 23 H 1.07995 * 120.41787 * 180.28290 * 15 14 13 24 24 H 1.08002 * 120.73949 * 179.77333 * 16 15 14 25 25 H 1.08007 * 120.41112 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5401 1.4401 0.7000 7 6 2.0080 -1.2116 -0.0005 8 1 3.0880 -1.2117 -0.0010 9 6 1.3016 -2.4353 -0.0016 10 6 1.8859 -3.7779 -0.0018 11 6 0.8653 -4.6551 0.0030 12 7 -0.3046 -3.9552 0.0066 13 6 -1.5802 -4.5144 0.0125 14 7 -1.7076 -5.8320 0.0095 15 6 -2.9038 -6.3959 0.0197 16 6 -4.0314 -5.5890 0.0229 17 6 -3.8608 -4.2130 0.0206 18 7 -2.6356 -3.7154 0.0150 19 7 -0.0192 -2.5852 0.0037 20 1 -0.4851 0.8400 -0.0004 21 1 2.9387 -4.0189 -0.0049 22 1 0.9575 -5.7312 0.0038 23 1 -3.0013 -7.4715 0.0218 24 1 -5.0205 -6.0226 0.0275 25 1 -4.7179 -3.5558 0.0234 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = 133.235541 kcal Electronic energy + Delta-G solvation = -13369.378788 eV Core-core repulsion = 10964.322819 eV Total energy + Delta-G solvation = -2405.055969 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55847 -38.84568 -33.78066 -33.26153 -32.27397 -29.41695 -28.48024 -26.18772 -24.08422 -23.03284 -20.22347 -19.43188 -17.44801 -16.92192 -16.16830 -15.49888 -14.86829 -14.77274 -14.28341 -13.13434 -12.96064 -12.72478 -12.37337 -12.29824 -11.21121 -10.97124 -10.62927 -10.51560 -10.45642 -10.04702 -9.83836 -9.08678 -8.70729 -8.45766 -7.77234 -7.32857 -6.47879 -4.45936 1.25122 1.56696 3.07978 3.17054 3.20633 3.26884 3.29982 4.06259 4.21716 4.51664 4.55562 4.91735 5.16116 5.43829 5.50781 5.53518 5.91114 5.99769 6.52515 6.64671 6.81814 7.01532 7.21468 7.38577 7.57294 8.12119 8.47388 8.69309 8.76185 9.01286 9.77814 10.46668 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.050440 B = 0.007989 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.983569 B = 3503.819410 C = 4048.957922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.427 4.427 8 H 0.087 0.913 9 C 0.203 3.797 10 C -0.254 4.254 11 C 0.032 3.968 12 N -0.347 5.347 13 C 0.580 3.420 14 N -0.567 5.567 15 C 0.179 3.821 16 C -0.299 4.299 17 C 0.179 3.821 18 N -0.514 5.514 19 N -0.305 5.305 20 H 0.276 0.724 21 H 0.136 0.864 22 H 0.154 0.846 23 H 0.164 0.836 24 H 0.139 0.861 25 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.663 -7.379 0.046 8.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.156 4.156 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.105 0.895 9 C 0.047 3.953 10 C -0.284 4.284 11 C -0.100 4.100 12 N -0.125 5.125 13 C 0.227 3.773 14 N -0.288 5.288 15 C 0.011 3.989 16 C -0.324 4.324 17 C 0.009 3.991 18 N -0.232 5.232 19 N -0.131 5.131 20 H 0.087 0.913 21 H 0.154 0.846 22 H 0.172 0.828 23 H 0.181 0.819 24 H 0.157 0.843 25 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.975 -6.360 0.043 8.075 hybrid contribution 0.212 -0.207 -0.006 0.297 sum -4.763 -6.567 0.037 8.113 Atomic orbital electron populations 1.69961 1.06962 1.28371 1.32306 1.25934 0.94920 1.00968 0.93770 0.86227 0.80149 0.80820 0.78972 1.19620 1.20369 1.18678 1.18711 0.93820 0.87605 1.46559 0.89450 1.21039 0.90034 0.91915 0.92316 1.22939 0.97887 0.93571 1.13984 1.22243 0.85780 0.97642 1.04317 1.46013 0.99669 1.07878 1.58976 1.18691 0.85365 0.83940 0.89326 1.67760 1.28263 1.11359 1.21465 1.22815 0.86530 1.00258 0.89338 1.22529 1.00962 0.96253 1.12657 1.23089 0.94140 0.93194 0.88640 1.68064 0.98255 1.39692 1.17167 1.79461 1.13389 0.82240 1.38020 0.91287 0.84599 0.82817 0.81907 0.84272 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.42 11.96 55.54 0.66 -20.76 15 2 C 0.07 1.77 5.49 -17.35 -0.10 1.67 15 3 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 15 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 7 C -0.43 -11.73 9.43 -37.80 -0.36 -12.09 15 8 H 0.09 2.19 7.84 -52.49 -0.41 1.78 15 9 C 0.20 5.75 6.92 -82.94 -0.57 5.18 15 10 C -0.25 -6.11 11.02 -37.58 -0.41 -6.53 15 11 C 0.03 0.75 10.96 -16.85 -0.18 0.57 15 12 N -0.35 -9.14 3.78 -13.79 -0.05 -9.19 15 13 C 0.58 13.68 8.43 -321.82 -2.71 10.97 15 14 N -0.57 -11.15 9.82 -13.75 -0.14 -11.29 15 15 C 0.18 2.63 11.30 -17.22 -0.19 2.43 15 16 C -0.30 -4.02 10.17 -39.27 -0.40 -4.42 15 17 C 0.18 2.98 11.30 -17.22 -0.19 2.78 15 18 N -0.51 -11.76 10.21 -13.75 -0.14 -11.90 15 19 N -0.31 -9.10 10.59 33.26 0.35 -8.75 15 20 H 0.28 7.21 8.30 -40.82 -0.34 6.87 15 21 H 0.14 2.77 8.06 -52.49 -0.42 2.35 15 22 H 0.15 3.01 8.00 -52.48 -0.42 2.59 15 23 H 0.16 1.64 8.06 -52.49 -0.42 1.22 15 24 H 0.14 1.28 8.06 -52.49 -0.42 0.86 15 25 H 0.16 2.08 8.06 -52.48 -0.42 1.66 15 LS Contribution 238.65 15.07 3.60 3.60 Total: -1.00 -34.18 238.65 -7.52 -41.70 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -1.66 Total: 1.67 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -5.13 Total: 0.57 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.69 Total: -61.89 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -34.18 -7.52 -41.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.936 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds