Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86796 * 119.99941 * 2 1 4 4 H 1.48494 * 109.47757 * 270.00073 * 3 2 1 5 5 H 1.48505 * 109.47021 * 30.00392 * 3 2 1 6 6 H 1.48501 * 109.47028 * 149.99989 * 3 2 1 7 7 C 1.39903 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.41295 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.46426 * 126.48011 * 180.02562 * 9 7 2 11 11 C 1.34577 * 107.15681 * 179.73567 * 10 9 7 12 12 N 1.36324 * 108.43296 * 359.97438 * 11 10 9 13 13 C 1.39285 * 125.43732 * 180.02562 * 12 11 10 14 14 N 1.32372 * 119.19498 * 359.73275 * 13 12 11 15 15 C 1.32250 * 120.76020 * 179.75961 * 14 13 12 16 16 C 1.38660 * 119.17098 * 0.50692 * 15 14 13 17 17 C 1.38651 * 118.52023 * 359.74634 * 16 15 14 18 18 N 1.32243 * 119.17429 * 0.02562 * 17 16 15 19 19 N 1.32925 * 126.47559 * 359.68228 * 9 7 2 20 20 H 0.97001 * 120.00311 * 0.02562 * 1 2 3 21 21 H 1.08001 * 126.41432 * 359.75113 * 10 9 7 22 22 H 1.08007 * 125.78114 * 179.97438 * 11 10 9 23 23 H 1.07995 * 120.41787 * 180.28290 * 15 14 13 24 24 H 1.08002 * 120.73949 * 179.77333 * 16 15 14 25 25 H 1.08007 * 120.41112 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4399 2.6526 0.7001 6 1 3.5401 1.4401 0.7000 7 6 2.0080 -1.2116 -0.0005 8 1 3.0880 -1.2117 -0.0010 9 6 1.3016 -2.4353 -0.0016 10 6 1.8859 -3.7779 -0.0018 11 6 0.8653 -4.6551 0.0030 12 7 -0.3046 -3.9552 0.0066 13 6 -1.5802 -4.5144 0.0125 14 7 -1.7076 -5.8320 0.0095 15 6 -2.9038 -6.3959 0.0197 16 6 -4.0314 -5.5890 0.0229 17 6 -3.8608 -4.2130 0.0206 18 7 -2.6356 -3.7154 0.0150 19 7 -0.0192 -2.5852 0.0037 20 1 -0.4851 0.8400 -0.0004 21 1 2.9387 -4.0189 -0.0049 22 1 0.9575 -5.7312 0.0038 23 1 -3.0013 -7.4715 0.0218 24 1 -5.0205 -6.0226 0.0275 25 1 -4.7179 -3.5558 0.0234 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = 110.752828 kcal Electronic energy + Delta-G solvation = -13370.353711 eV Core-core repulsion = 10964.322819 eV Total energy + Delta-G solvation = -2406.030892 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.07006 -40.61958 -35.67091 -34.71789 -33.90219 -31.14367 -30.31320 -28.10311 -25.44211 -24.63030 -22.01573 -21.25171 -19.10282 -18.63145 -17.89671 -16.85474 -16.48855 -16.44415 -15.66413 -14.80621 -14.45781 -14.34784 -14.17906 -14.00774 -12.91897 -12.72668 -12.56684 -11.94128 -11.91443 -11.77915 -11.54404 -10.75206 -10.53274 -10.06475 -9.71763 -9.09287 -8.42949 -6.51704 -0.19746 0.26946 1.40465 1.43477 1.59516 1.61109 1.69433 2.28178 2.29188 3.00336 3.22141 3.49360 3.57801 3.83620 4.18473 4.34352 4.50573 4.59758 4.92651 5.04390 5.20077 5.25838 5.45743 5.65059 6.06533 6.22896 6.70459 6.79894 6.98260 7.19332 7.85043 8.54331 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.050440 B = 0.007989 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.983569 B = 3503.819410 C = 4048.957922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.462 4.462 8 H 0.101 0.899 9 C 0.168 3.832 10 C -0.278 4.278 11 C 0.045 3.955 12 N -0.371 5.371 13 C 0.544 3.456 14 N -0.572 5.572 15 C 0.170 3.830 16 C -0.254 4.254 17 C 0.157 3.843 18 N -0.570 5.570 19 N -0.350 5.350 20 H 0.278 0.722 21 H 0.165 0.835 22 H 0.190 0.810 23 H 0.219 0.781 24 H 0.198 0.802 25 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 -9.086 0.065 10.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.200 4.200 3 Si 0.819 3.181 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.502 4.502 8 H 0.119 0.881 9 C 0.012 3.988 10 C -0.307 4.307 11 C -0.089 4.089 12 N -0.151 5.151 13 C 0.190 3.810 14 N -0.294 5.294 15 C 0.004 3.996 16 C -0.277 4.277 17 C -0.009 4.009 18 N -0.289 5.289 19 N -0.177 5.177 20 H 0.088 0.912 21 H 0.183 0.817 22 H 0.207 0.793 23 H 0.235 0.765 24 H 0.215 0.785 25 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.227 -8.120 0.063 10.233 hybrid contribution 0.221 0.018 -0.014 0.222 sum -6.006 -8.102 0.049 10.085 Atomic orbital electron populations 1.70129 1.09163 1.29456 1.34291 1.27036 0.95656 1.05037 0.92294 0.84961 0.78819 0.75045 0.79304 1.18789 1.19975 1.17174 1.19200 0.94706 0.88366 1.47903 0.88060 1.21582 0.90434 0.94090 0.92737 1.23180 0.99632 0.91879 1.16047 1.22731 0.84794 0.98997 1.02344 1.46090 1.01578 1.07094 1.60340 1.18887 0.84788 0.85440 0.91843 1.67800 1.30971 1.09335 1.21306 1.23903 0.85288 1.02848 0.87526 1.23155 1.03284 0.94481 1.06800 1.23830 0.92964 0.95774 0.88381 1.67948 1.00276 1.41861 1.18840 1.79235 1.14666 0.85335 1.38420 0.91152 0.81720 0.79330 0.76460 0.78471 0.78769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.23 11.96 21.82 0.26 -47.97 15 2 C 0.02 0.94 5.49 85.24 0.47 1.41 15 3 Si 1.00 40.73 29.56 68.60 2.03 42.76 15 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 15 6 H -0.25 -9.44 7.11 99.48 0.71 -8.73 15 7 C -0.46 -26.45 9.43 23.43 0.22 -26.22 15 8 H 0.10 5.23 7.84 -2.91 -0.02 5.20 15 9 C 0.17 10.00 6.92 41.86 0.29 10.29 15 10 C -0.28 -13.74 11.02 23.56 0.26 -13.48 15 11 C 0.04 2.10 10.96 83.16 0.91 3.01 15 12 N -0.37 -20.17 3.78 -197.56 -0.75 -20.91 15 13 C 0.54 25.90 8.43 261.14 2.20 28.10 15 14 N -0.57 -21.47 9.82 -197.42 -1.94 -23.41 15 15 C 0.17 4.25 11.30 84.73 0.96 5.21 15 16 C -0.25 -5.56 10.17 22.47 0.23 -5.33 15 17 C 0.16 4.86 11.30 84.73 0.96 5.82 15 18 N -0.57 -26.42 10.21 -197.43 -2.02 -28.43 15 19 N -0.35 -22.00 10.59 -48.69 -0.52 -22.52 15 20 H 0.28 15.28 8.30 -92.71 -0.77 14.51 15 21 H 0.17 6.77 8.06 -2.91 -0.02 6.75 15 22 H 0.19 7.21 8.00 -2.91 -0.02 7.19 15 23 H 0.22 2.95 8.06 -2.91 -0.02 2.93 15 24 H 0.20 2.09 8.06 -2.91 -0.02 2.07 15 25 H 0.20 4.47 8.06 -2.91 -0.02 4.45 15 Total: -1.00 -81.86 238.65 4.78 -77.08 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.21 Total: 14.59 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.50 Total: 8.81 kcal Atomic # 7 Polarization: -138.29 SS G_CDS: -4.96 Total: -143.24 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -81.86 4.78 -77.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.835 kcal (2) G-P(sol) polarization free energy of solvation -81.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds