Wall clock time and date at job start Mon Mar 30 2020 02:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39025 * 126.70091 * 2 1 4 4 C 1.39722 * 125.53519 * 359.71130 * 3 2 1 5 5 H 1.08002 * 120.00053 * 359.97438 * 4 3 2 6 6 C 1.40264 * 119.99818 * 180.02562 * 4 3 2 7 7 N 1.30715 * 119.99992 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00069 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46874 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46804 * 120.00076 * 8 6 4 11 11 H 1.48502 * 109.46986 * 240.00008 * 8 6 4 12 12 O 1.35134 * 108.92108 * 179.73444 * 3 2 1 13 13 C 1.35034 * 109.92727 * 359.97438 * 12 3 2 14 14 C 1.38727 * 132.79271 * 179.97438 * 13 12 3 15 15 C 1.38075 * 119.93821 * 180.02562 * 14 13 12 16 16 C 1.50695 * 119.63850 * 179.97438 * 15 14 13 17 17 C 1.38856 * 120.73240 * 359.97438 * 15 14 13 18 18 C 1.36552 * 120.47406 * 0.02562 * 17 15 14 19 19 C 1.40268 * 119.73920 * 359.97438 * 18 17 15 20 20 H 1.09002 * 109.46456 * 90.03029 * 1 2 3 21 21 H 1.08998 * 109.47396 * 210.02573 * 1 2 3 22 22 H 1.08997 * 109.47009 * 330.03197 * 1 2 3 23 23 H 0.97001 * 119.99948 * 179.97438 * 7 6 4 24 24 H 1.08004 * 120.03330 * 0.02562 * 14 13 12 25 25 H 1.08999 * 109.46991 * 89.99329 * 16 15 14 26 26 H 1.08995 * 109.47462 * 209.99492 * 16 15 14 27 27 H 1.08997 * 109.46971 * 330.00017 * 16 15 14 28 28 H 1.08000 * 119.76535 * 180.02562 * 17 15 14 29 29 H 1.08000 * 120.12753 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1147 0.0000 4 6 1.9116 2.4453 -0.0057 5 1 0.8561 2.6742 -0.0111 6 6 2.8545 3.4837 -0.0056 7 7 4.1319 3.2066 0.0004 8 14 2.2847 5.2627 -0.0140 9 1 0.8004 5.3069 -0.0206 10 1 2.7956 5.9518 1.1982 11 1 2.8051 5.9434 -1.2268 12 8 3.6247 0.7020 0.0059 13 6 3.6753 -0.6474 0.0104 14 6 4.7279 -1.5510 0.0166 15 6 4.4713 -2.9077 0.0196 16 6 5.6198 -3.8833 0.0258 17 6 3.1667 -3.3832 0.0171 18 6 2.1131 -2.5146 0.0110 19 6 2.3509 -1.1322 0.0078 20 1 -0.3632 -0.0005 -1.0277 21 1 -0.3634 -0.8897 0.5142 22 1 -0.3633 0.8902 0.5133 23 1 4.7840 3.9248 0.0001 24 1 5.7471 -1.1936 0.0191 25 1 5.8937 -4.1155 1.0549 26 1 5.3221 -4.7982 -0.4863 27 1 6.4744 -3.4416 -0.4867 28 1 2.9840 -4.4476 0.0199 29 1 1.1006 -2.8906 0.0086 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261260357.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:14 Heat of formation + Delta-G solvation = -10.130600 kcal Electronic energy + Delta-G solvation = -13835.099533 eV Core-core repulsion = 11495.074334 eV Total energy + Delta-G solvation = -2340.025199 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.70439 -36.96665 -33.94469 -32.78875 -30.60730 -29.28808 -27.60489 -26.21738 -23.84440 -21.71945 -20.36396 -18.70862 -17.63530 -15.74168 -15.24207 -14.96353 -14.49042 -14.06277 -13.27325 -12.95231 -12.84481 -12.37266 -11.98313 -11.83717 -11.63408 -11.53376 -11.36592 -10.92471 -10.74946 -10.69662 -10.66548 -10.08927 -9.70072 -9.59443 -8.50543 -7.44708 -7.12745 -6.97134 -4.59663 2.15647 2.58577 2.82812 2.90514 2.97217 3.67628 3.68895 4.49814 4.81999 5.02114 5.65510 5.76912 5.89270 6.02487 6.10298 6.26680 6.30905 6.43561 6.53048 6.68171 6.72288 6.78977 6.87973 7.10864 7.17569 7.24828 7.51872 7.66062 7.71699 7.82527 8.01593 8.34887 8.46464 8.99675 9.84312 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.044363 B = 0.008697 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.001285 B = 3218.548298 C = 3829.102975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 C -0.397 4.397 3 C 0.245 3.755 4 C -0.422 4.422 5 H 0.113 0.887 6 C 0.064 3.936 7 N -0.757 5.757 8 Si 0.928 3.072 9 H -0.255 1.255 10 H -0.268 1.268 11 H -0.268 1.268 12 O -0.170 6.170 13 C -0.021 4.021 14 C -0.085 4.085 15 C -0.155 4.155 16 C -0.091 4.091 17 C -0.120 4.120 18 C -0.145 4.145 19 C -0.040 4.040 20 H 0.030 0.970 21 H 0.035 0.965 22 H 0.044 0.956 23 H 0.290 0.710 24 H 0.108 0.892 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -3.002 0.056 3.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.400 4.400 3 C 0.194 3.806 4 C -0.450 4.450 5 H 0.130 0.870 6 C -0.160 4.160 7 N -0.381 5.381 8 Si 0.751 3.249 9 H -0.178 1.178 10 H -0.193 1.193 11 H -0.193 1.193 12 O -0.071 6.071 13 C -0.068 4.068 14 C -0.104 4.104 15 C -0.156 4.156 16 C -0.148 4.148 17 C -0.138 4.138 18 C -0.164 4.164 19 C -0.041 4.041 20 H 0.049 0.951 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.101 0.899 24 H 0.127 0.873 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.188 -2.761 0.057 2.768 hybrid contribution -0.173 0.707 -0.001 0.728 sum 0.016 -2.054 0.056 2.054 Atomic orbital electron populations 1.19463 0.91347 0.99314 0.98627 1.19611 0.94857 0.90358 1.35152 1.19402 0.78833 0.93426 0.88921 1.19077 0.95539 0.86877 1.43459 0.86968 1.26321 0.94411 1.03195 0.92054 1.69743 1.01932 1.36333 1.30045 0.85910 0.80575 0.79445 0.78997 1.17797 1.19316 1.19317 1.84622 1.28231 1.17360 1.76840 1.19703 0.95029 0.83290 1.08735 1.19461 0.95892 0.90595 1.04405 1.19074 0.94312 0.92465 1.09701 1.20502 0.96115 0.97381 1.00816 1.20205 0.92134 0.97913 1.03564 1.20009 0.97723 0.91388 1.07248 1.18650 0.93091 0.93480 0.98905 0.95095 0.94642 0.93685 0.89897 0.87344 0.92738 0.92708 0.92711 0.87853 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.66 10.14 36.01 0.37 -0.30 15 2 C -0.40 -10.28 6.30 -103.20 -0.65 -10.93 15 3 C 0.25 6.76 6.75 -38.74 -0.26 6.50 15 4 C -0.42 -10.83 9.03 -38.27 -0.35 -11.18 15 5 H 0.11 2.66 7.21 -52.49 -0.38 2.28 15 6 C 0.06 1.54 5.50 -17.27 -0.09 1.45 15 7 N -0.76 -19.34 11.96 55.57 0.66 -18.67 15 8 Si 0.93 17.44 29.56 -169.99 -5.03 12.42 15 9 H -0.25 -4.64 7.11 56.52 0.40 -4.24 15 10 H -0.27 -4.95 7.11 56.52 0.40 -4.54 15 11 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 12 O -0.17 -4.85 8.90 1.32 0.01 -4.84 15 13 C -0.02 -0.54 7.37 -38.34 -0.28 -0.82 15 14 C -0.08 -1.92 9.70 -39.46 -0.38 -2.30 15 15 C -0.16 -3.10 5.89 -104.46 -0.62 -3.71 15 16 C -0.09 -1.39 9.99 36.00 0.36 -1.03 15 17 C -0.12 -2.39 9.61 -39.96 -0.38 -2.77 15 18 C -0.15 -3.21 10.08 -39.43 -0.40 -3.61 15 19 C -0.04 -1.03 6.13 -106.94 -0.66 -1.68 15 20 H 0.03 0.63 8.14 -51.93 -0.42 0.20 15 21 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.04 0.92 7.49 -51.93 -0.39 0.53 15 23 H 0.29 6.56 8.29 -40.82 -0.34 6.22 15 24 H 0.11 2.26 8.06 -52.48 -0.42 1.84 15 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.05 0.74 8.08 -51.93 -0.42 0.32 15 27 H 0.05 0.78 8.08 -51.93 -0.42 0.36 15 28 H 0.10 1.72 8.06 -52.49 -0.42 1.29 15 29 H 0.10 2.06 8.06 -52.49 -0.42 1.63 15 LS Contribution 255.98 15.07 3.86 3.86 Total: -1.00 -28.57 255.98 -7.11 -35.68 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.28 Total: 1.95 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -3.35 Total: -30.40 kcal Atomic # 7 Polarization: -19.34 SS G_CDS: 0.66 Total: -18.67 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: 0.01 Total: -4.84 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.57 -7.11 -35.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260357.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.548 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds