Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39025 * 126.70091 * 2 1 4 4 C 1.39722 * 125.53519 * 359.71130 * 3 2 1 5 5 H 1.08002 * 120.00053 * 359.97438 * 4 3 2 6 6 C 1.40264 * 119.99818 * 180.02562 * 4 3 2 7 7 N 1.30715 * 119.99992 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00069 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46874 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46804 * 120.00076 * 8 6 4 11 11 H 1.48502 * 109.46986 * 240.00008 * 8 6 4 12 12 O 1.35134 * 108.92108 * 179.73444 * 3 2 1 13 13 C 1.35034 * 109.92727 * 359.97438 * 12 3 2 14 14 C 1.38727 * 132.79271 * 179.97438 * 13 12 3 15 15 C 1.38075 * 119.93821 * 180.02562 * 14 13 12 16 16 C 1.50695 * 119.63850 * 179.97438 * 15 14 13 17 17 C 1.38856 * 120.73240 * 359.97438 * 15 14 13 18 18 C 1.36552 * 120.47406 * 0.02562 * 17 15 14 19 19 C 1.40268 * 119.73920 * 359.97438 * 18 17 15 20 20 H 1.09002 * 109.46456 * 90.03029 * 1 2 3 21 21 H 1.08998 * 109.47396 * 210.02573 * 1 2 3 22 22 H 1.08997 * 109.47009 * 330.03197 * 1 2 3 23 23 H 0.97001 * 119.99948 * 179.97438 * 7 6 4 24 24 H 1.08004 * 120.03330 * 0.02562 * 14 13 12 25 25 H 1.08999 * 109.46991 * 89.99329 * 16 15 14 26 26 H 1.08995 * 109.47462 * 209.99492 * 16 15 14 27 27 H 1.08997 * 109.46971 * 330.00017 * 16 15 14 28 28 H 1.08000 * 119.76535 * 180.02562 * 17 15 14 29 29 H 1.08000 * 120.12753 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1147 0.0000 4 6 1.9116 2.4453 -0.0057 5 1 0.8561 2.6742 -0.0111 6 6 2.8545 3.4837 -0.0056 7 7 4.1319 3.2066 0.0004 8 14 2.2847 5.2627 -0.0140 9 1 0.8004 5.3069 -0.0206 10 1 2.7956 5.9518 1.1982 11 1 2.8051 5.9434 -1.2268 12 8 3.6247 0.7020 0.0059 13 6 3.6753 -0.6474 0.0104 14 6 4.7279 -1.5510 0.0166 15 6 4.4713 -2.9077 0.0196 16 6 5.6198 -3.8833 0.0258 17 6 3.1667 -3.3832 0.0171 18 6 2.1131 -2.5146 0.0110 19 6 2.3509 -1.1322 0.0078 20 1 -0.3632 -0.0005 -1.0277 21 1 -0.3634 -0.8897 0.5142 22 1 -0.3633 0.8902 0.5133 23 1 4.7840 3.9248 0.0001 24 1 5.7471 -1.1936 0.0191 25 1 5.8937 -4.1155 1.0549 26 1 5.3221 -4.7982 -0.4863 27 1 6.4744 -3.4416 -0.4867 28 1 2.9840 -4.4476 0.0199 29 1 1.1006 -2.8906 0.0086 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261260357.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = -25.485354 kcal Electronic energy + Delta-G solvation = -13835.765365 eV Core-core repulsion = 11495.074334 eV Total energy + Delta-G solvation = -2340.691031 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.58644 -38.68769 -35.78006 -34.58652 -32.25753 -31.04603 -29.39270 -27.86478 -25.57489 -23.49834 -22.11237 -20.55137 -19.48853 -17.52134 -17.03078 -16.67210 -16.45564 -15.65755 -14.94349 -14.55662 -14.24472 -14.05258 -13.70978 -13.49155 -13.28521 -13.09056 -12.76283 -12.65821 -12.51783 -12.29765 -12.19659 -11.76622 -11.42570 -11.36815 -10.30721 -9.24208 -8.91232 -8.83172 -6.49506 0.39085 0.82534 1.29586 1.35147 1.55255 1.90944 2.10827 2.66492 3.01440 3.16872 4.06012 4.21547 4.42840 4.47537 4.56097 4.70534 4.85405 4.92925 4.95285 4.99180 5.07440 5.12237 5.16271 5.37168 5.46970 5.49953 5.79685 5.86992 5.91586 6.04152 6.24273 6.50744 6.59963 7.06952 8.09941 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.044363 B = 0.008697 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.001285 B = 3218.548298 C = 3829.102975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 C -0.420 4.420 3 C 0.202 3.798 4 C -0.452 4.452 5 H 0.123 0.877 6 C 0.020 3.980 7 N -0.804 5.804 8 Si 1.010 2.990 9 H -0.244 1.244 10 H -0.260 1.260 11 H -0.261 1.261 12 O -0.200 6.200 13 C -0.067 4.067 14 C -0.106 4.106 15 C -0.138 4.138 16 C -0.090 4.090 17 C -0.116 4.116 18 C -0.147 4.147 19 C -0.073 4.073 20 H 0.039 0.961 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.299 0.701 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.150 0.850 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 -4.445 0.073 4.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.423 4.423 3 C 0.152 3.848 4 C -0.479 4.479 5 H 0.141 0.859 6 C -0.200 4.200 7 N -0.428 5.428 8 Si 0.828 3.172 9 H -0.167 1.167 10 H -0.185 1.185 11 H -0.185 1.185 12 O -0.102 6.102 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.134 4.134 18 C -0.165 4.165 19 C -0.074 4.074 20 H 0.058 0.942 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.109 0.891 24 H 0.134 0.866 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.167 0.833 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.126 -4.236 0.074 4.239 hybrid contribution 0.020 0.873 -0.005 0.873 sum -0.106 -3.363 0.069 3.366 Atomic orbital electron populations 1.19473 0.88936 1.00304 0.99423 1.20180 0.96737 0.90288 1.35073 1.20028 0.79043 0.94949 0.90803 1.19484 0.96541 0.87162 1.44719 0.85927 1.27419 0.94001 1.07941 0.90595 1.69828 1.03480 1.38301 1.31208 0.84731 0.80490 0.72695 0.79314 1.16655 1.18476 1.18499 1.84532 1.29172 1.18881 1.77579 1.20393 0.96911 0.83015 1.10987 1.19878 0.95660 0.91637 1.05282 1.19755 0.96390 0.92038 1.05624 1.20615 0.94412 0.97053 1.02609 1.20754 0.91328 0.99941 1.01390 1.20411 0.99782 0.90187 1.06139 1.19024 0.92736 0.95071 1.00543 0.94248 0.92964 0.93269 0.89057 0.86585 0.90820 0.89904 0.91789 0.83271 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.07 10.14 71.24 0.72 -0.35 15 2 C -0.42 -22.49 6.30 -18.94 -0.12 -22.61 15 3 C 0.20 11.76 6.75 22.82 0.15 11.91 15 4 C -0.45 -24.23 9.03 23.12 0.21 -24.02 15 5 H 0.12 6.01 7.21 -2.91 -0.02 5.98 15 6 C 0.02 0.97 5.50 85.35 0.47 1.44 15 7 N -0.80 -42.97 11.96 21.89 0.26 -42.71 15 8 Si 1.01 36.06 29.56 68.60 2.03 38.09 15 9 H -0.24 -8.16 7.11 99.48 0.71 -7.46 15 10 H -0.26 -8.87 7.11 99.48 0.71 -8.17 15 11 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 12 O -0.20 -12.14 8.90 -18.19 -0.16 -12.30 15 13 C -0.07 -3.65 7.37 23.07 0.17 -3.48 15 14 C -0.11 -4.83 9.70 22.35 0.22 -4.62 15 15 C -0.14 -5.14 5.89 -19.76 -0.12 -5.25 15 16 C -0.09 -2.36 9.99 71.23 0.71 -1.65 15 17 C -0.12 -4.23 9.61 22.02 0.21 -4.02 15 18 C -0.15 -6.25 10.08 22.37 0.23 -6.03 15 19 C -0.07 -3.78 6.13 -21.37 -0.13 -3.91 15 20 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 21 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.05 2.03 7.49 -2.39 -0.02 2.02 15 23 H 0.30 14.06 8.29 -92.71 -0.77 13.29 15 24 H 0.12 4.92 8.06 -2.91 -0.02 4.90 15 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 26 H 0.08 1.75 8.08 -2.39 -0.02 1.73 15 27 H 0.06 1.58 8.08 -2.39 -0.02 1.56 15 28 H 0.15 4.08 8.06 -2.91 -0.02 4.06 15 29 H 0.13 4.67 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -65.82 255.98 6.00 -59.82 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.15 Total: 19.68 kcal Atomic # 6 Polarization: -65.30 SS G_CDS: 2.72 Total: -62.58 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.26 Total: -42.71 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.16 Total: -12.30 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Total: -65.82 6.00 -59.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260357.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.337 kcal (2) G-P(sol) polarization free energy of solvation -65.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds