Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.33951 * 125.33512 * 2 1 4 4 C 1.34978 * 111.56598 * 180.14980 * 3 2 1 5 5 C 1.38989 * 132.69653 * 179.26174 * 4 3 2 6 6 C 1.37921 * 120.01077 * 179.97438 * 5 4 3 7 7 C 1.38611 * 120.64490 * 359.97438 * 6 5 4 8 8 C 1.37934 * 120.15959 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.17747 * 179.97438 * 8 7 6 10 10 C 1.39046 * 119.64648 * 0.27334 * 8 7 6 11 11 C 1.38653 * 125.34017 * 179.39678 * 2 1 3 12 12 C 1.40951 * 127.30820 * 0.02562 * 11 2 1 13 13 H 1.08007 * 120.00009 * 142.08868 * 12 11 2 14 14 C 1.39780 * 120.00260 * 322.09003 * 12 11 2 15 15 N 1.31014 * 119.99572 * 340.63212 * 14 12 11 16 16 Si 1.86792 * 120.00361 * 160.63521 * 14 12 11 17 17 H 1.48506 * 109.47522 * 59.99893 * 16 14 12 18 18 H 1.48499 * 109.47518 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47401 * 299.99927 * 16 14 12 20 20 H 1.09005 * 109.46642 * 270.66503 * 1 2 3 21 21 H 1.08997 * 109.47306 * 30.66345 * 1 2 3 22 22 H 1.08994 * 109.47003 * 150.66595 * 1 2 3 23 23 H 1.07992 * 119.99498 * 359.97438 * 5 4 3 24 24 H 1.07995 * 119.67278 * 179.97438 * 6 5 4 25 25 H 1.08004 * 119.91880 * 179.97438 * 7 6 5 26 26 H 1.08999 * 109.46823 * 95.59666 * 9 8 7 27 27 H 1.08997 * 109.47048 * 335.59762 * 9 8 7 28 28 H 1.09000 * 109.47487 * 215.59719 * 9 8 7 29 29 H 0.96999 * 119.99778 * 184.92238 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2818 1.0927 0.0000 4 6 3.5928 0.7715 -0.0033 5 6 4.7513 1.5393 -0.0178 6 6 5.9861 0.9249 -0.0169 7 6 6.0874 -0.4575 -0.0011 8 6 4.9487 -1.2357 0.0134 9 6 5.0584 -2.7386 0.0299 10 6 3.6989 -0.6262 0.0063 11 6 2.3091 -1.1310 0.0119 12 6 1.8887 -2.4763 0.0256 13 1 2.4323 -3.2177 -0.5414 14 6 0.7684 -2.8509 0.7728 15 7 0.3373 -2.0783 1.7390 16 14 -0.1139 -4.4531 0.3939 17 1 0.8273 -5.5891 0.5645 18 1 -1.2613 -4.6180 1.3221 19 1 -0.6090 -4.4266 -1.0060 20 1 -0.3633 0.0119 1.0277 21 1 -0.3634 0.8839 -0.5241 22 1 -0.3633 -0.8958 -0.5034 23 1 4.6846 2.6170 -0.0297 24 1 6.8827 1.5267 -0.0286 25 1 7.0604 -0.9263 -0.0010 26 1 4.9899 -3.0965 1.0572 27 1 6.0161 -3.0377 -0.3960 28 1 4.2485 -3.1686 -0.5594 29 1 -0.3952 -2.3708 2.3037 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266324.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = -8.964159 kcal Electronic energy + Delta-G solvation = -14177.092155 eV Core-core repulsion = 11837.117537 eV Total energy + Delta-G solvation = -2339.974618 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.56179 -38.66447 -36.08788 -33.63617 -32.05087 -31.52427 -28.79134 -28.02694 -25.68290 -23.16011 -21.98424 -21.31696 -18.87307 -17.30793 -17.00097 -16.67247 -16.36545 -15.89808 -14.66174 -14.48835 -14.34031 -14.18493 -13.88126 -13.58303 -13.31571 -13.11562 -12.71741 -12.57949 -12.43700 -12.32832 -12.03616 -11.73915 -11.47331 -10.88235 -10.12898 -9.19340 -8.57937 -8.35130 -6.21740 0.32648 0.69725 1.36261 1.43183 1.52310 2.02091 2.29072 2.44345 2.89197 3.26254 3.98940 4.20143 4.22956 4.48740 4.59068 4.67226 4.86492 4.89796 4.90492 4.92507 5.02173 5.12295 5.32209 5.42510 5.45948 5.60995 5.67143 5.89300 5.95681 6.18672 6.47081 6.74722 7.03611 7.11299 8.54520 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.034681 B = 0.011562 C = 0.009057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.170409 B = 2421.234238 C = 3090.849451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 C -0.161 4.161 3 O -0.225 6.225 4 C 0.020 3.980 5 C -0.144 4.144 6 C -0.092 4.092 7 C -0.163 4.163 8 C -0.053 4.053 9 C -0.103 4.103 10 C -0.177 4.177 11 C 0.007 3.993 12 C -0.475 4.475 13 H 0.078 0.922 14 C 0.037 3.963 15 N -0.840 5.840 16 Si 0.971 3.029 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.263 1.263 20 H 0.059 0.941 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.139 0.861 24 H 0.169 0.831 25 H 0.155 0.845 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 0.354 -2.323 6.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.207 4.207 3 O -0.129 6.129 4 C -0.028 4.028 5 C -0.163 4.163 6 C -0.110 4.110 7 C -0.180 4.180 8 C -0.053 4.053 9 C -0.160 4.160 10 C -0.178 4.178 11 C 0.005 3.995 12 C -0.507 4.507 13 H 0.096 0.904 14 C -0.174 4.174 15 N -0.469 5.469 16 Si 0.793 3.207 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.188 1.188 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.157 0.843 24 H 0.187 0.813 25 H 0.173 0.827 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.860 0.650 -2.181 6.287 hybrid contribution -0.776 -0.622 0.194 1.014 sum 5.084 0.028 -1.987 5.458 Atomic orbital electron populations 1.19622 0.85375 0.99961 1.01107 1.22872 0.93409 0.82655 1.21784 1.83447 1.14931 1.35940 1.78615 1.20215 0.84218 0.94572 1.03829 1.20195 0.88364 0.99695 1.08039 1.21162 0.96305 0.94800 0.98710 1.21171 0.97704 0.93907 1.05267 1.19717 0.90893 0.97267 0.97413 1.20746 1.02664 0.90528 1.02023 1.20634 0.95769 0.93888 1.07522 1.18792 0.87866 0.94284 0.98607 1.18714 1.11257 0.92502 1.28180 0.90431 1.26430 0.96236 1.01484 0.93297 1.69974 1.24539 1.38430 1.13918 0.85419 0.78133 0.78052 0.79108 1.18689 1.19681 1.18790 0.92252 0.92892 0.92242 0.84283 0.81329 0.82717 0.92056 0.89258 0.92434 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.21 8.60 71.24 0.61 0.40 15 2 C -0.16 -8.93 7.07 25.79 0.18 -8.75 15 3 O -0.22 -12.19 10.52 -5.88 -0.06 -12.26 15 4 C 0.02 0.98 7.36 22.92 0.17 1.15 15 5 C -0.14 -5.56 10.06 22.37 0.23 -5.34 15 6 C -0.09 -2.91 10.01 22.28 0.22 -2.69 15 7 C -0.16 -5.47 9.68 22.29 0.22 -5.25 15 8 C -0.05 -2.24 5.90 -19.74 -0.12 -2.36 15 9 C -0.10 -3.86 9.60 71.24 0.68 -3.18 15 10 C -0.18 -9.14 6.16 -20.06 -0.12 -9.26 15 11 C 0.01 0.38 5.68 -19.96 -0.11 0.27 15 12 C -0.48 -25.99 8.31 23.31 0.19 -25.79 15 13 H 0.08 4.09 6.10 -2.91 -0.02 4.07 15 14 C 0.04 1.91 4.19 85.19 0.36 2.27 15 15 N -0.84 -44.82 10.54 21.81 0.23 -44.59 15 16 Si 0.97 39.10 29.60 68.60 2.03 41.13 15 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 18 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 20 H 0.06 2.97 7.08 -2.38 -0.02 2.95 15 21 H 0.05 2.25 8.14 -2.39 -0.02 2.23 15 22 H 0.06 2.90 7.15 -2.39 -0.02 2.88 15 23 H 0.14 4.50 8.06 -2.91 -0.02 4.48 15 24 H 0.17 3.62 8.06 -2.91 -0.02 3.60 15 25 H 0.16 3.88 8.06 -2.91 -0.02 3.85 15 26 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 27 H 0.09 2.55 8.05 -2.39 -0.02 2.53 15 28 H 0.06 2.37 5.74 -2.39 -0.01 2.36 15 29 H 0.28 13.79 8.31 -92.71 -0.77 13.02 15 Total: -1.00 -64.83 247.49 5.86 -58.96 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.16 Total: 15.29 kcal Atomic # 6 Polarization: -61.05 SS G_CDS: 2.51 Total: -58.54 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.23 Total: -44.59 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.06 Total: -12.26 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -64.83 5.86 -58.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266324.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.999 kcal (2) G-P(sol) polarization free energy of solvation -64.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds