Wall clock time and date at job start Mon Mar 30 2020 02:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38857 * 119.62702 * 2 1 4 4 C 1.36546 * 120.47488 * 179.97438 * 3 2 1 5 5 C 1.40278 * 119.73737 * 0.03964 * 4 3 2 6 6 C 1.41207 * 133.54008 * 180.27145 * 5 4 3 7 7 C 1.39028 * 106.60290 * 180.09242 * 6 5 4 8 8 C 1.39721 * 125.53836 * 179.88100 * 7 6 5 9 9 H 1.07998 * 119.99769 * 353.64615 * 8 7 6 10 10 C 1.40262 * 120.00022 * 173.91893 * 8 7 6 11 11 N 1.30716 * 120.00127 * 6.07710 * 10 8 7 12 12 Si 1.86792 * 120.00172 * 186.07277 * 10 8 7 13 13 H 1.48504 * 109.47328 * 94.98584 * 12 10 8 14 14 H 1.48508 * 109.47119 * 214.98359 * 12 10 8 15 15 H 1.48503 * 109.47397 * 334.98533 * 12 10 8 16 16 O 1.35129 * 108.91767 * 359.61522 * 7 6 5 17 17 C 1.35042 * 109.93136 * 0.24500 * 16 7 6 18 18 C 1.38068 * 119.63456 * 179.97438 * 2 1 3 19 19 C 1.50696 * 120.03489 * 0.04797 * 18 2 1 20 20 H 1.09002 * 109.47032 * 270.01777 * 1 2 3 21 21 H 1.08997 * 109.47251 * 30.02428 * 1 2 3 22 22 H 1.08999 * 109.46510 * 150.02465 * 1 2 3 23 23 H 1.07999 * 119.76288 * 359.97438 * 3 2 1 24 24 H 1.07998 * 120.13486 * 180.02562 * 4 3 2 25 25 H 1.07998 * 126.69717 * 359.97438 * 6 5 4 26 26 H 0.96996 * 120.00157 * 179.97438 * 11 10 8 27 27 H 1.09002 * 109.47392 * 269.97670 * 19 18 2 28 28 H 1.08999 * 109.47184 * 29.97718 * 19 18 2 29 29 H 1.09004 * 109.47376 * 149.97544 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1935 1.2070 0.0000 4 6 3.5588 1.2272 0.0005 5 6 4.2726 0.0196 0.0002 6 6 5.6487 -0.2970 0.0054 7 6 5.7372 -1.6844 -0.0003 8 6 6.9235 -2.4225 -0.0002 9 1 7.8733 -1.9181 -0.0990 10 6 6.8805 -3.8191 0.1223 11 7 5.7305 -4.4406 0.1169 12 14 8.4665 -4.7910 0.2931 13 1 8.7494 -5.0279 1.7316 14 1 8.3261 -6.0943 -0.4049 15 1 9.5849 -4.0236 -0.3115 16 8 4.4893 -2.2030 0.0000 17 6 3.5770 -1.2073 0.0003 18 6 2.1897 -1.2001 0.0005 19 6 1.4288 -2.5008 0.0000 20 1 -0.3633 0.0003 1.0277 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3632 -0.8902 -0.5135 23 1 1.6436 2.1365 -0.0004 24 1 4.0871 2.1692 0.0009 25 1 6.4717 0.4022 0.0107 26 1 5.7008 -5.4065 0.2012 27 1 1.2449 -2.8146 1.0276 28 1 0.4773 -2.3649 -0.5141 29 1 2.0136 -3.2638 -0.5137 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261277336.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:12 Heat of formation + Delta-G solvation = -6.998039 kcal Electronic energy + Delta-G solvation = -13892.677854 eV Core-core repulsion = 11552.788493 eV Total energy + Delta-G solvation = -2339.889361 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.68494 -37.23890 -33.89316 -32.80435 -30.40248 -29.96685 -27.50625 -25.73439 -24.08509 -21.31209 -20.18918 -19.23058 -17.55985 -16.03404 -15.23800 -14.74385 -14.52814 -14.29365 -13.38755 -13.16111 -12.58866 -12.25776 -12.17907 -11.64468 -11.60906 -11.51767 -11.31000 -11.20217 -10.85740 -10.60137 -10.54567 -10.24371 -9.69315 -9.62310 -8.56639 -7.39345 -7.11260 -6.94385 -4.63202 2.14413 2.60635 2.84823 2.91412 2.96780 3.68629 3.72863 4.50384 4.79666 5.07414 5.64750 5.68307 5.78226 5.99169 6.04397 6.09158 6.29984 6.33517 6.40507 6.55331 6.61105 6.76469 6.82177 7.05240 7.25995 7.27687 7.54953 7.64859 7.67479 7.84262 8.03882 8.35963 8.46282 9.00691 9.86071 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.050656 B = 0.008433 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.613737 B = 3319.447862 C = 3848.906412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.156 4.156 3 C -0.116 4.116 4 C -0.151 4.151 5 C -0.044 4.044 6 C -0.423 4.423 7 C 0.241 3.759 8 C -0.428 4.428 9 H 0.111 0.889 10 C 0.065 3.935 11 N -0.758 5.758 12 Si 0.929 3.071 13 H -0.264 1.264 14 H -0.272 1.272 15 H -0.256 1.256 16 O -0.168 6.168 17 C -0.021 4.021 18 C -0.052 4.052 19 C -0.108 4.108 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.290 0.710 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 1.164 0.112 3.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C -0.135 4.135 4 C -0.170 4.170 5 C -0.045 4.045 6 C -0.444 4.444 7 C 0.191 3.809 8 C -0.456 4.456 9 H 0.129 0.871 10 C -0.158 4.158 11 N -0.381 5.381 12 Si 0.751 3.249 13 H -0.189 1.189 14 H -0.197 1.197 15 H -0.180 1.180 16 O -0.068 6.068 17 C -0.068 4.068 18 C -0.053 4.053 19 C -0.164 4.164 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.122 0.878 24 H 0.121 0.879 25 H 0.139 0.861 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.981 0.656 0.115 4.036 hybrid contribution 0.792 -0.230 0.109 0.832 sum -3.189 0.426 0.224 3.225 Atomic orbital electron populations 1.20576 0.92322 1.01355 1.00827 1.18937 0.94531 0.91710 1.10493 1.20185 0.93797 0.96171 1.03313 1.20015 0.93365 0.95770 1.07854 1.18808 0.94127 0.92940 0.98654 1.20978 0.93716 0.94006 1.35681 1.19589 0.82518 0.90247 0.88588 1.19029 0.91827 0.91114 1.43655 0.87108 1.26298 0.98841 0.98573 0.92137 1.69740 1.26807 1.11455 1.30139 0.85941 0.80528 0.78748 0.79634 1.18911 1.19691 1.17961 1.84600 1.14001 1.31581 1.76640 1.19522 0.90713 0.87083 1.09471 1.18307 0.88519 0.94877 1.03592 1.20700 0.99133 0.95081 1.01488 0.92755 0.92860 0.92215 0.87826 0.87871 0.86122 0.89911 0.92162 0.92096 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.58 36.01 0.35 -1.10 15 2 C -0.16 -3.14 5.89 -104.45 -0.62 -3.76 15 3 C -0.12 -2.34 9.61 -39.96 -0.38 -2.73 15 4 C -0.15 -3.39 10.08 -39.43 -0.40 -3.79 15 5 C -0.04 -1.15 6.17 -106.94 -0.66 -1.81 15 6 C -0.42 -11.30 10.94 -38.16 -0.42 -11.72 15 7 C 0.24 6.74 6.74 -38.73 -0.26 6.48 15 8 C -0.43 -11.13 9.29 -38.27 -0.36 -11.49 15 9 H 0.11 2.65 7.86 -52.49 -0.41 2.24 15 10 C 0.07 1.58 5.49 -17.27 -0.09 1.49 15 11 N -0.76 -19.34 11.98 55.57 0.67 -18.67 15 12 Si 0.93 17.53 29.57 -169.99 -5.03 12.51 15 13 H -0.26 -4.92 7.11 56.52 0.40 -4.52 15 14 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 15 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 16 O -0.17 -4.78 8.92 1.31 0.01 -4.77 15 17 C -0.02 -0.55 7.04 -38.34 -0.27 -0.82 15 18 C -0.05 -1.18 5.89 -104.50 -0.62 -1.80 15 19 C -0.11 -2.06 9.60 36.00 0.35 -1.72 15 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.05 0.72 8.08 -51.93 -0.42 0.30 15 22 H 0.06 0.85 5.90 -51.93 -0.31 0.54 15 23 H 0.10 1.74 8.06 -52.49 -0.42 1.31 15 24 H 0.10 2.07 8.06 -52.49 -0.42 1.64 15 25 H 0.12 2.99 8.06 -52.49 -0.42 2.57 15 26 H 0.29 6.56 8.29 -40.82 -0.34 6.22 15 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 28 H 0.06 0.98 5.91 -51.93 -0.31 0.67 15 29 H 0.06 1.34 8.09 -51.93 -0.42 0.92 15 LS Contribution 252.72 15.07 3.81 3.81 Total: -1.00 -28.83 252.72 -7.03 -35.87 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.11 Total: 4.01 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: -3.38 Total: -32.75 kcal Atomic # 7 Polarization: -19.34 SS G_CDS: 0.67 Total: -18.67 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: 0.01 Total: -4.77 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.83 -7.03 -35.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277336.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.869 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds