Wall clock time and date at job start Mon Mar 30 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39024 * 126.69927 * 2 1 4 4 C 1.39719 * 125.53675 * 0.04265 * 3 2 1 5 5 H 1.07994 * 120.00642 * 0.03164 * 4 3 2 6 6 C 1.40273 * 119.99628 * 180.02562 * 4 3 2 7 7 N 1.30708 * 120.00348 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99816 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47324 * 90.00365 * 8 6 4 10 10 H 1.48503 * 109.47294 * 210.00056 * 8 6 4 11 11 H 1.48496 * 109.47238 * 329.99873 * 8 6 4 12 12 O 1.35135 * 108.91871 * 180.02562 * 3 2 1 13 13 C 1.35031 * 109.92909 * 0.02562 * 12 3 2 14 14 C 1.38731 * 132.79549 * 180.02562 * 13 12 3 15 15 C 1.38076 * 119.93374 * 179.97438 * 14 13 12 16 16 C 1.38852 * 120.73606 * 359.97438 * 15 14 13 17 17 C 1.36542 * 120.47490 * 359.77364 * 16 15 14 18 18 C 1.50707 * 120.13017 * 180.02562 * 17 16 15 19 19 C 1.40268 * 119.73834 * 0.44498 * 17 16 15 20 20 H 1.09004 * 109.47062 * 269.94989 * 1 2 3 21 21 H 1.09003 * 109.46737 * 29.94242 * 1 2 3 22 22 H 1.09003 * 109.47291 * 149.94418 * 1 2 3 23 23 H 0.96994 * 120.00078 * 179.97438 * 7 6 4 24 24 H 1.08001 * 120.02894 * 359.97438 * 14 13 12 25 25 H 1.08004 * 119.62962 * 179.97438 * 15 14 13 26 26 H 1.08001 * 119.76379 * 180.02562 * 16 15 14 27 27 H 1.08996 * 109.46966 * 270.44582 * 18 17 16 28 28 H 1.09004 * 109.46814 * 30.44792 * 18 17 16 29 29 H 1.08999 * 109.47039 * 150.44309 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1147 0.0000 4 6 1.9116 2.4452 0.0008 5 1 0.8562 2.6742 0.0021 6 6 2.8546 3.4837 0.0002 7 7 4.1319 3.2067 -0.0017 8 14 2.2847 5.2627 0.0021 9 1 2.1357 5.7333 1.4026 10 1 3.2874 6.1045 -0.6988 11 1 0.9781 5.3647 -0.6962 12 8 3.6247 0.7020 -0.0006 13 6 3.6753 -0.6474 -0.0015 14 6 4.7279 -1.5510 -0.0019 15 6 4.4712 -2.9077 -0.0024 16 6 3.1666 -3.3832 -0.0020 17 6 2.1131 -2.5146 0.0036 18 6 0.7002 -3.0391 0.0046 19 6 2.3509 -1.1323 -0.0005 20 1 -0.3633 -0.0009 1.0277 21 1 -0.3633 0.8905 -0.5130 22 1 -0.3634 -0.8895 -0.5147 23 1 4.7839 3.9248 -0.0025 24 1 5.7471 -1.1937 -0.0019 25 1 5.2944 -3.6069 -0.0031 26 1 2.9839 -4.4476 -0.0019 27 1 0.3602 -3.1692 -1.0227 28 1 0.6691 -3.9982 0.5218 29 1 0.0496 -2.3295 0.5157 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278571.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:43 Heat of formation + Delta-G solvation = -7.517027 kcal Electronic energy + Delta-G solvation = -14017.037121 eV Core-core repulsion = 11677.125255 eV Total energy + Delta-G solvation = -2339.911866 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72901 -36.85321 -33.98127 -32.88798 -30.78204 -29.08724 -27.16888 -26.47468 -23.97247 -21.17617 -20.97028 -18.34063 -17.85038 -15.66129 -15.25089 -14.96005 -14.50807 -14.14972 -13.09931 -12.84212 -12.76591 -12.52700 -11.96210 -11.81481 -11.63933 -11.51149 -11.23381 -10.92988 -10.77012 -10.69326 -10.54064 -10.05447 -9.67325 -9.50278 -8.48717 -7.46251 -7.12222 -6.93225 -4.59424 2.15771 2.60801 2.84993 2.90522 2.95758 3.67803 3.70442 4.53017 4.83209 5.01539 5.70831 5.77061 6.01421 6.11507 6.25507 6.26668 6.39189 6.45590 6.54740 6.72033 6.75096 6.80468 6.88467 7.10436 7.23361 7.24277 7.49928 7.66026 7.74452 7.83585 8.02806 8.35679 8.47125 9.00340 9.84797 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.042965 B = 0.009504 C = 0.007827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.540552 B = 2945.458533 C = 3576.551094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 C -0.394 4.394 3 C 0.245 3.755 4 C -0.422 4.422 5 H 0.112 0.888 6 C 0.064 3.936 7 N -0.757 5.757 8 Si 0.928 3.072 9 H -0.263 1.263 10 H -0.272 1.272 11 H -0.256 1.256 12 O -0.170 6.170 13 C -0.023 4.023 14 C -0.091 4.091 15 C -0.179 4.179 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.100 4.100 19 C -0.035 4.035 20 H 0.030 0.970 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.290 0.710 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -2.633 -0.034 3.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.396 4.396 3 C 0.194 3.806 4 C -0.450 4.450 5 H 0.130 0.870 6 C -0.160 4.160 7 N -0.381 5.381 8 Si 0.751 3.249 9 H -0.188 1.188 10 H -0.197 1.197 11 H -0.179 1.179 12 O -0.070 6.070 13 C -0.070 4.070 14 C -0.110 4.110 15 C -0.198 4.198 16 C -0.143 4.143 17 C -0.118 4.118 18 C -0.157 4.157 19 C -0.036 4.036 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.819 -2.389 -0.038 3.003 hybrid contribution -0.009 0.686 0.002 0.686 sum -1.828 -1.702 -0.036 2.498 Atomic orbital electron populations 1.19624 0.91442 0.99542 0.98613 1.19563 0.94798 0.90238 1.35014 1.19389 0.78863 0.93417 0.88956 1.19031 0.95494 0.86903 1.43548 0.87038 1.26317 0.94414 1.03173 0.92070 1.69730 1.01925 1.36423 1.29993 0.85959 0.79972 0.79266 0.79718 1.18824 1.19708 1.17936 1.84623 1.28226 1.17382 1.76815 1.19724 0.95055 0.83275 1.08902 1.19625 0.95903 0.91248 1.04228 1.20297 0.96051 0.93511 1.09921 1.20210 0.92445 0.97739 1.03943 1.18858 0.94841 0.91380 1.06742 1.20680 0.94395 0.99835 1.00790 1.18487 0.93068 0.92877 0.99129 0.95161 0.93844 0.93922 0.89855 0.87376 0.87314 0.87893 0.92800 0.93264 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.76 8.88 36.01 0.32 -0.44 15 2 C -0.39 -10.06 6.30 -103.20 -0.65 -10.71 15 3 C 0.24 6.71 6.75 -38.74 -0.26 6.45 15 4 C -0.42 -10.81 9.03 -38.26 -0.35 -11.15 15 5 H 0.11 2.63 7.20 -52.49 -0.38 2.25 15 6 C 0.06 1.55 5.50 -17.27 -0.09 1.45 15 7 N -0.76 -19.34 11.96 55.57 0.66 -18.67 15 8 Si 0.93 17.43 29.56 -169.99 -5.03 12.40 15 9 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 10 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 11 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 12 O -0.17 -4.84 8.90 1.32 0.01 -4.83 15 13 C -0.02 -0.59 7.37 -38.34 -0.28 -0.88 15 14 C -0.09 -2.07 10.06 -39.46 -0.40 -2.47 15 15 C -0.18 -3.60 10.02 -39.41 -0.40 -3.99 15 16 C -0.13 -2.50 9.62 -39.97 -0.38 -2.88 15 17 C -0.12 -2.57 5.89 -104.47 -0.62 -3.19 15 18 C -0.10 -1.80 9.03 36.01 0.33 -1.48 15 19 C -0.03 -0.87 5.99 -106.94 -0.64 -1.52 15 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.04 0.88 7.48 -51.93 -0.39 0.49 15 22 H 0.04 0.82 6.07 -51.93 -0.32 0.51 15 23 H 0.29 6.59 8.29 -40.82 -0.34 6.25 15 24 H 0.11 2.23 8.06 -52.49 -0.42 1.81 15 25 H 0.11 1.81 8.06 -52.48 -0.42 1.39 15 26 H 0.10 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 28 H 0.05 0.76 8.09 -51.93 -0.42 0.34 15 29 H 0.07 1.22 5.68 -51.93 -0.29 0.92 15 LS Contribution 249.46 15.07 3.76 3.76 Total: -1.00 -28.48 249.46 -7.06 -35.54 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.04 Total: 2.60 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -3.42 Total: -30.80 kcal Atomic # 7 Polarization: -19.34 SS G_CDS: 0.66 Total: -18.67 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.01 Total: -4.83 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.48 -7.06 -35.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278571.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.022 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds