Wall clock time and date at job start Mon Mar 30 2020 02:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33990 * 124.92486 * 2 1 4 4 C 1.46788 * 106.18385 * 179.73763 * 3 2 1 5 5 C 1.39405 * 134.36633 * 180.20683 * 4 3 2 6 6 C 1.36743 * 119.71541 * 180.02562 * 5 4 3 7 7 C 1.38747 * 120.41372 * 359.97438 * 6 5 4 8 8 C 1.37845 * 120.68822 * 359.97438 * 7 6 5 9 9 C 1.50692 * 120.09105 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47509 * 264.97683 * 9 8 7 11 11 H 1.08005 * 119.99614 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00145 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00337 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99972 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46787 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47247 * 120.00419 * 14 12 10 17 17 H 1.48506 * 109.46737 * 240.00527 * 14 12 10 18 18 C 1.38948 * 119.81688 * 0.02562 * 8 7 6 19 19 O 1.34456 * 124.92186 * 180.13183 * 2 1 3 20 20 H 1.09002 * 109.47190 * 89.99399 * 1 2 3 21 21 H 1.08996 * 109.46824 * 209.99517 * 1 2 3 22 22 H 1.08997 * 109.46678 * 329.99734 * 1 2 3 23 23 H 1.08002 * 126.91012 * 0.02562 * 3 2 1 24 24 H 1.07997 * 120.14565 * 0.02562 * 5 4 3 25 25 H 1.08002 * 119.79007 * 179.97438 * 6 5 4 26 26 H 1.08000 * 119.65082 * 180.02562 * 7 6 5 27 27 H 1.09002 * 109.47304 * 24.98213 * 9 8 7 28 28 H 1.08998 * 109.47163 * 144.97933 * 9 8 7 29 29 H 0.97001 * 120.00553 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2741 1.0986 0.0000 4 6 3.6642 0.6270 0.0065 5 6 4.9075 1.2575 0.0131 6 6 6.0492 0.5050 0.0175 7 6 5.9771 -0.8806 0.0161 8 6 4.7567 -1.5216 0.0106 9 6 4.6941 -3.0272 0.0097 10 6 4.5550 -3.5234 -1.4065 11 1 4.5162 -2.8189 -2.2241 12 6 4.4782 -4.8768 -1.6584 13 7 4.5260 -5.7347 -0.6628 14 14 4.3064 -5.4918 -3.4139 15 1 4.2772 -4.3340 -4.3433 16 1 5.4602 -6.3650 -3.7477 17 1 3.0456 -6.2654 -3.5462 18 6 3.5845 -0.7756 0.0060 19 8 2.2768 -1.1025 -0.0025 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3632 0.8900 0.5139 23 1 1.9374 2.1248 0.0004 24 1 4.9687 2.3358 0.0146 25 1 7.0130 0.9922 0.0223 26 1 6.8866 -1.4630 0.0201 27 1 5.6079 -3.4292 0.4474 28 1 3.8357 -3.3556 0.5957 29 1 4.4716 -6.6869 -0.8400 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261283125.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:05 Heat of formation + Delta-G solvation = -7.327865 kcal Electronic energy + Delta-G solvation = -13733.013589 eV Core-core repulsion = 11393.109926 eV Total energy + Delta-G solvation = -2339.903663 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.30218 -38.96824 -35.66900 -34.17212 -32.67401 -31.78623 -28.93112 -27.72425 -25.31121 -23.49439 -22.07969 -21.38862 -18.62677 -18.21938 -17.30990 -17.11160 -16.53607 -16.15612 -14.86813 -14.63103 -14.53000 -14.00651 -13.84386 -13.79405 -13.38661 -13.13214 -13.01570 -12.81364 -12.68329 -12.40209 -12.21871 -11.67231 -11.33492 -10.70086 -10.66576 -9.39316 -8.88608 -8.24503 -6.39675 0.09840 0.53407 1.34171 1.35520 1.47477 1.50800 1.97720 2.35582 2.89979 3.04524 3.56112 3.84373 4.14201 4.28543 4.37847 4.43479 4.51880 4.66722 4.70680 4.89313 4.91949 5.06901 5.17058 5.24635 5.40815 5.56358 5.66586 5.67759 5.81233 5.95328 6.08885 6.40594 6.70793 7.28576 8.84530 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.009658 C = 0.007915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.319862 B = 2898.413706 C = 3536.770443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.009 3.991 3 C -0.217 4.217 4 C -0.144 4.144 5 C -0.095 4.095 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.064 4.064 9 C 0.062 3.938 10 C -0.529 4.529 11 H 0.047 0.953 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.969 3.031 15 H -0.268 1.268 16 H -0.269 1.269 17 H -0.274 1.274 18 C 0.017 3.983 19 O -0.222 6.222 20 H 0.096 0.904 21 H 0.075 0.925 22 H 0.124 0.876 23 H 0.193 0.807 24 H 0.161 0.839 25 H 0.164 0.836 26 H 0.134 0.866 27 H 0.013 0.987 28 H -0.009 1.009 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 14.964 0.716 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.038 4.038 3 C -0.235 4.235 4 C -0.145 4.145 5 C -0.113 4.113 6 C -0.140 4.140 7 C -0.136 4.136 8 C -0.065 4.065 9 C 0.025 3.975 10 C -0.567 4.567 11 H 0.066 0.934 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.792 3.208 15 H -0.192 1.192 16 H -0.194 1.194 17 H -0.200 1.200 18 C -0.030 4.030 19 O -0.125 6.125 20 H 0.115 0.885 21 H 0.094 0.906 22 H 0.142 0.858 23 H 0.210 0.790 24 H 0.178 0.822 25 H 0.182 0.818 26 H 0.151 0.849 27 H 0.032 0.968 28 H 0.009 0.991 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.072 14.510 0.761 15.090 hybrid contribution 0.017 -1.012 -0.593 1.173 sum -4.055 13.499 0.168 14.095 Atomic orbital electron populations 1.20623 0.81873 1.05584 1.04995 1.23404 0.96077 0.83550 1.00817 1.22545 0.89143 1.00331 1.11502 1.20419 0.96303 0.91765 1.06040 1.20551 0.89141 1.01141 1.00475 1.21103 0.99918 0.92362 1.00588 1.21026 0.95455 0.95739 1.01387 1.19542 0.90135 0.96728 1.00090 1.17997 0.95707 0.87256 0.96558 1.21308 1.50858 0.92099 0.92401 0.93430 1.25951 0.94381 0.96811 1.02148 1.70084 1.50985 1.02598 1.33254 0.85350 0.78315 0.78327 0.78787 1.19219 1.19364 1.19959 1.19755 0.82881 0.94495 1.05832 1.83991 1.15993 1.36003 1.76483 0.88516 0.90631 0.85795 0.78991 0.82166 0.81816 0.84861 0.96841 0.99073 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.39 71.24 0.74 -0.85 15 2 C 0.01 0.29 7.23 24.72 0.18 0.47 15 3 C -0.22 -6.59 11.01 23.54 0.26 -6.33 15 4 C -0.14 -5.39 6.40 -20.21 -0.13 -5.52 15 5 C -0.10 -2.93 10.05 22.20 0.22 -2.70 15 6 C -0.12 -3.82 9.98 22.04 0.22 -3.60 15 7 C -0.12 -4.77 9.65 22.30 0.22 -4.55 15 8 C -0.06 -3.19 5.08 -19.79 -0.10 -3.29 15 9 C 0.06 3.61 5.11 29.10 0.15 3.76 15 10 C -0.53 -32.45 9.09 25.60 0.23 -32.22 15 11 H 0.05 2.92 7.74 -2.91 -0.02 2.90 15 12 C 0.01 0.31 5.46 84.65 0.46 0.78 15 13 N -0.93 -58.24 13.29 21.44 0.28 -57.95 15 14 Si 0.97 46.16 29.54 68.60 2.03 48.18 15 15 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 17 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 18 C 0.02 0.80 7.10 22.99 0.16 0.96 15 19 O -0.22 -10.30 10.58 -8.92 -0.09 -10.40 15 20 H 0.10 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.12 1.67 8.14 -2.39 -0.02 1.65 15 23 H 0.19 3.95 8.06 -2.91 -0.02 3.93 15 24 H 0.16 3.47 8.06 -2.91 -0.02 3.44 15 25 H 0.16 3.62 8.06 -2.91 -0.02 3.60 15 26 H 0.13 5.07 8.06 -2.91 -0.02 5.04 15 27 H 0.01 0.80 8.05 -2.39 -0.02 0.78 15 28 H -0.01 -0.58 8.12 -2.39 -0.02 -0.60 15 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 15 Total: -1.00 -75.43 260.15 5.97 -69.47 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.14 Total: 3.79 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 2.61 Total: -53.09 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.28 Total: -57.95 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.09 Total: -10.40 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -75.43 5.97 -69.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261283125.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.140 kcal (2) G-P(sol) polarization free energy of solvation -75.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds