Wall clock time and date at job start Mon Mar 30 2020 02:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86791 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47428 * 240.00056 * 3 2 1 5 5 H 1.48500 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47040 * 119.99960 * 3 2 1 7 7 C 1.39997 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00136 * 194.32741 * 7 2 1 9 9 C 1.40955 * 119.99937 * 14.61230 * 7 2 1 10 10 C 1.36363 * 120.52459 * 29.77564 * 9 7 2 11 11 C 1.50419 * 120.41833 * 180.62425 * 10 9 7 12 12 C 1.52673 * 110.67449 * 323.88737 * 11 10 9 13 13 C 1.50526 * 110.18312 * 51.18923 * 12 11 10 14 14 C 1.37965 * 120.55345 * 144.82440 * 13 12 11 15 15 C 1.38406 * 120.12282 * 179.97438 * 14 13 12 16 16 C 1.38208 * 120.44015 * 0.02562 * 15 14 13 17 17 C 1.38684 * 120.04492 * 0.03704 * 16 15 14 18 18 O 1.35833 * 120.22599 * 180.02562 * 17 16 15 19 19 C 1.39186 * 119.59982 * 324.57396 * 13 12 11 20 20 H 0.96996 * 120.00358 * 359.97438 * 1 2 3 21 21 H 1.07997 * 119.79207 * 0.59307 * 10 9 7 22 22 H 1.09004 * 109.23887 * 84.18864 * 11 10 9 23 23 H 1.08999 * 109.23830 * 203.61633 * 11 10 9 24 24 H 1.08996 * 109.35320 * 171.41234 * 12 11 10 25 25 H 1.09009 * 109.34891 * 291.11673 * 12 11 10 26 26 H 1.07998 * 119.93743 * 359.95761 * 14 13 12 27 27 H 1.07993 * 119.77682 * 179.97438 * 15 14 13 28 28 H 1.08005 * 119.97790 * 180.02562 * 16 15 14 29 29 H 0.96705 * 113.99693 * 90.00349 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0957 1.6964 -1.2124 5 1 1.2770 2.7464 -0.0006 6 1 3.0957 1.6963 1.2125 7 6 2.0080 -1.2124 0.0005 8 1 3.0627 -1.2269 0.2320 9 6 1.3374 -2.4135 -0.3069 10 6 0.2666 -2.4123 -1.1513 11 6 -0.4559 -3.6933 -1.4667 12 6 0.5254 -4.8602 -1.5465 13 6 1.3924 -4.8946 -0.3164 14 6 1.7995 -6.0982 0.2212 15 6 2.5971 -6.1194 1.3522 16 6 2.9921 -4.9389 1.9527 17 6 2.5890 -3.7220 1.4236 18 8 2.9755 -2.5596 2.0106 19 6 1.7895 -3.7005 0.2784 20 1 -0.4850 0.8400 0.0004 21 1 -0.0651 -1.4857 -1.5960 22 1 -1.1893 -3.8938 -0.6856 23 1 -0.9689 -3.5903 -2.4229 24 1 -0.0301 -5.7948 -1.6231 25 1 1.1564 -4.7418 -2.4274 26 1 1.4951 -7.0255 -0.2411 27 1 2.9122 -7.0647 1.7685 28 1 3.6148 -4.9642 2.8348 29 1 3.8088 -2.2056 1.6710 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261291360.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:54 Heat of formation + Delta-G solvation = -16.411441 kcal Electronic energy + Delta-G solvation = -14181.862366 eV Core-core repulsion = 11841.564810 eV Total energy + Delta-G solvation = -2340.297557 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.29671 -36.27494 -35.02177 -33.03979 -30.36809 -29.09997 -27.85831 -25.00957 -22.34788 -21.63225 -20.74418 -18.08094 -17.03572 -16.10592 -15.24260 -14.96023 -14.59360 -14.00395 -13.74831 -13.21066 -12.54850 -12.08962 -11.83545 -11.61413 -11.34335 -11.28257 -10.97465 -10.76076 -10.53549 -10.37564 -10.06788 -9.25622 -9.12137 -8.92896 -8.41778 -7.86011 -6.60507 -6.39100 -4.02905 1.92639 1.99140 3.14220 3.21827 3.24192 3.91823 4.18072 4.56173 5.10920 5.43061 5.49352 5.52727 5.77838 6.01017 6.01470 6.17331 6.27617 6.32573 6.67937 6.75220 6.86340 7.00384 7.02373 7.21991 7.25838 7.38534 7.47794 7.63110 8.16350 8.43075 8.62576 8.96591 9.19513 9.31241 10.61417 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.032985 B = 0.011854 C = 0.009137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.661040 B = 2361.502441 C = 3063.587503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.073 3.927 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.444 4.444 8 H 0.063 0.937 9 C 0.066 3.934 10 C -0.294 4.294 11 C -0.056 4.056 12 C -0.073 4.073 13 C -0.075 4.075 14 C -0.137 4.137 15 C -0.131 4.131 16 C -0.162 4.162 17 C 0.115 3.885 18 O -0.478 6.478 19 C -0.039 4.039 20 H 0.271 0.729 21 H 0.110 0.890 22 H 0.038 0.962 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 -6.678 -0.245 7.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.476 4.476 8 H 0.081 0.919 9 C 0.064 3.936 10 C -0.316 4.316 11 C -0.094 4.094 12 C -0.110 4.110 13 C -0.076 4.076 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.180 4.180 17 C 0.070 3.930 18 O -0.287 6.287 19 C -0.040 4.040 20 H 0.082 0.918 21 H 0.128 0.872 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.261 -6.586 0.104 7.350 hybrid contribution 0.761 0.887 -0.021 1.168 sum 4.022 -5.699 0.082 6.976 Atomic orbital electron populations 1.69815 1.07153 1.27897 1.39025 1.25612 0.94615 1.00204 0.93573 0.86548 0.80071 0.81642 0.79303 1.19483 1.20842 1.19466 1.18914 0.95673 0.90530 1.42444 0.91890 1.17394 0.95363 0.88275 0.92531 1.22772 1.05547 0.95476 1.07853 1.19986 0.96337 0.94145 0.98892 1.20380 0.96955 0.98762 0.94887 1.19898 0.98081 0.92095 0.97476 1.20810 1.00423 0.96926 0.97349 1.20724 1.00295 0.96987 0.96947 1.21288 1.03020 0.92355 1.01362 1.18477 0.97156 0.85211 0.92190 1.84856 1.44020 1.37039 1.62797 1.20049 0.95396 0.95379 0.93178 0.91812 0.87173 0.94368 0.93570 0.92503 0.91474 0.86975 0.86965 0.86642 0.76478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.59 11.15 55.55 0.62 -21.97 15 2 C 0.07 1.95 5.14 -17.33 -0.09 1.86 15 3 Si 0.90 19.85 29.58 -169.99 -5.03 14.83 15 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 7 C -0.44 -11.96 7.36 -37.89 -0.28 -12.24 15 8 H 0.06 1.58 6.09 -52.49 -0.32 1.26 15 9 C 0.07 1.77 5.51 -105.34 -0.58 1.18 15 10 C -0.29 -7.75 8.76 -35.12 -0.31 -8.06 15 11 C -0.06 -1.24 6.06 -28.19 -0.17 -1.41 15 12 C -0.07 -1.41 5.91 -28.14 -0.17 -1.57 15 13 C -0.08 -1.58 5.66 -104.45 -0.59 -2.17 15 14 C -0.14 -2.44 9.70 -39.62 -0.38 -2.82 15 15 C -0.13 -2.22 10.03 -39.53 -0.40 -2.62 15 16 C -0.16 -2.99 9.99 -39.43 -0.39 -3.38 15 17 C 0.11 2.52 6.66 -38.88 -0.26 2.26 15 18 O -0.48 -10.43 11.19 -19.22 -0.22 -10.64 15 19 C -0.04 -0.94 5.76 -104.80 -0.60 -1.55 15 20 H 0.27 7.02 8.30 -40.82 -0.34 6.68 15 21 H 0.11 3.13 6.37 -52.49 -0.33 2.79 15 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.06 0.93 8.06 -51.93 -0.42 0.51 15 25 H 0.07 1.25 8.14 -51.92 -0.42 0.83 15 26 H 0.11 1.66 8.06 -52.49 -0.42 1.23 15 27 H 0.11 1.52 8.06 -52.49 -0.42 1.09 15 28 H 0.12 1.84 8.06 -52.48 -0.42 1.42 15 29 H 0.38 6.75 7.85 45.56 0.36 7.10 15 LS Contribution 245.04 15.07 3.69 3.69 Total: -1.00 -29.93 245.04 -7.54 -37.47 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.39 Total: 7.13 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -4.22 Total: -30.51 kcal Atomic # 7 Polarization: -22.59 SS G_CDS: 0.62 Total: -21.97 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.22 Total: -10.64 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.93 -7.54 -37.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291360.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.062 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds