Wall clock time and date at job start Mon Mar 30 2020 02:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86791 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47428 * 240.00056 * 3 2 1 5 5 H 1.48500 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47040 * 119.99960 * 3 2 1 7 7 C 1.39997 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00136 * 194.32741 * 7 2 1 9 9 C 1.40955 * 119.99937 * 14.61230 * 7 2 1 10 10 C 1.36363 * 120.52459 * 29.77564 * 9 7 2 11 11 C 1.50419 * 120.41833 * 180.62425 * 10 9 7 12 12 C 1.52673 * 110.67449 * 323.88737 * 11 10 9 13 13 C 1.50526 * 110.18312 * 51.18923 * 12 11 10 14 14 C 1.37965 * 120.55345 * 144.82440 * 13 12 11 15 15 C 1.38406 * 120.12282 * 179.97438 * 14 13 12 16 16 C 1.38208 * 120.44015 * 0.02562 * 15 14 13 17 17 C 1.38684 * 120.04492 * 0.03704 * 16 15 14 18 18 O 1.35833 * 120.22599 * 180.02562 * 17 16 15 19 19 C 1.39186 * 119.59982 * 324.57396 * 13 12 11 20 20 H 0.96996 * 120.00358 * 359.97438 * 1 2 3 21 21 H 1.07997 * 119.79207 * 0.59307 * 10 9 7 22 22 H 1.09004 * 109.23887 * 84.18864 * 11 10 9 23 23 H 1.08999 * 109.23830 * 203.61633 * 11 10 9 24 24 H 1.08996 * 109.35320 * 171.41234 * 12 11 10 25 25 H 1.09009 * 109.34891 * 291.11673 * 12 11 10 26 26 H 1.07998 * 119.93743 * 359.95761 * 14 13 12 27 27 H 1.07993 * 119.77682 * 179.97438 * 15 14 13 28 28 H 1.08005 * 119.97790 * 180.02562 * 16 15 14 29 29 H 0.96705 * 113.99693 * 90.00349 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0957 1.6964 -1.2124 5 1 1.2770 2.7464 -0.0006 6 1 3.0957 1.6963 1.2125 7 6 2.0080 -1.2124 0.0005 8 1 3.0627 -1.2269 0.2320 9 6 1.3374 -2.4135 -0.3069 10 6 0.2666 -2.4123 -1.1513 11 6 -0.4559 -3.6933 -1.4667 12 6 0.5254 -4.8602 -1.5465 13 6 1.3924 -4.8946 -0.3164 14 6 1.7995 -6.0982 0.2212 15 6 2.5971 -6.1194 1.3522 16 6 2.9921 -4.9389 1.9527 17 6 2.5890 -3.7220 1.4236 18 8 2.9755 -2.5596 2.0106 19 6 1.7895 -3.7005 0.2784 20 1 -0.4850 0.8400 0.0004 21 1 -0.0651 -1.4857 -1.5960 22 1 -1.1893 -3.8938 -0.6856 23 1 -0.9689 -3.5903 -2.4229 24 1 -0.0301 -5.7948 -1.6231 25 1 1.1564 -4.7418 -2.4274 26 1 1.4951 -7.0255 -0.2411 27 1 2.9122 -7.0647 1.7685 28 1 3.6148 -4.9642 2.8348 29 1 3.8088 -2.2056 1.6710 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261291360.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:54 Heat of formation + Delta-G solvation = -35.088088 kcal Electronic energy + Delta-G solvation = -14182.672246 eV Core-core repulsion = 11841.564810 eV Total energy + Delta-G solvation = -2341.107437 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86064 -37.90308 -36.74467 -34.85906 -32.12768 -30.68867 -29.52955 -26.86148 -24.00580 -23.24596 -22.38389 -19.89353 -18.68244 -17.83103 -17.06813 -16.53862 -16.22994 -15.59600 -15.37252 -14.88694 -14.20311 -13.73513 -13.51060 -13.24664 -13.09930 -12.87372 -12.63171 -12.47383 -12.20357 -12.06605 -11.77492 -11.10663 -10.94308 -10.69098 -10.16710 -9.33411 -8.44659 -8.39178 -6.09664 0.35940 0.50854 1.36824 1.39579 1.49223 2.14083 2.31225 2.88492 3.53779 3.60581 4.00834 4.15688 4.35867 4.52218 4.57220 4.59486 4.78779 4.80870 5.07326 5.18664 5.28129 5.34852 5.39308 5.54923 5.60697 5.68152 5.83357 6.07428 6.19601 6.41214 6.96559 7.08758 7.17960 7.36300 8.62909 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.032985 B = 0.011854 C = 0.009137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.661040 B = 2361.502441 C = 3063.587503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.023 3.977 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.470 4.470 8 H 0.071 0.929 9 C 0.046 3.954 10 C -0.324 4.324 11 C -0.053 4.053 12 C -0.068 4.068 13 C -0.088 4.088 14 C -0.132 4.132 15 C -0.113 4.113 16 C -0.161 4.161 17 C 0.092 3.908 18 O -0.497 6.497 19 C -0.091 4.091 20 H 0.273 0.727 21 H 0.075 0.925 22 H 0.026 0.974 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.153 0.847 27 H 0.160 0.840 28 H 0.142 0.858 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 -8.976 0.249 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.187 4.187 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.501 4.501 8 H 0.089 0.911 9 C 0.045 3.955 10 C -0.347 4.347 11 C -0.090 4.090 12 C -0.104 4.104 13 C -0.089 4.089 14 C -0.149 4.149 15 C -0.130 4.130 16 C -0.180 4.180 17 C 0.048 3.952 18 O -0.308 6.308 19 C -0.091 4.091 20 H 0.083 0.917 21 H 0.093 0.907 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.090 0.910 26 H 0.171 0.829 27 H 0.177 0.823 28 H 0.160 0.840 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.574 -8.898 0.593 10.022 hybrid contribution 0.388 1.496 -0.133 1.551 sum 4.962 -7.402 0.460 8.923 Atomic orbital electron populations 1.69947 1.08885 1.28810 1.40427 1.26556 0.95399 1.03906 0.92815 0.85411 0.78642 0.76799 0.79671 1.18764 1.20482 1.18438 1.19317 0.96281 0.91520 1.43018 0.91132 1.17843 0.95371 0.90169 0.92124 1.22830 1.06601 0.96160 1.09079 1.19935 0.96508 0.93511 0.99047 1.20373 0.96485 0.98912 0.94666 1.20193 0.98339 0.92383 0.97943 1.21250 0.99398 0.97048 0.97235 1.21301 0.97901 0.98172 0.95664 1.21585 1.02901 0.91462 1.02013 1.18820 0.97713 0.86337 0.92373 1.84793 1.45064 1.37931 1.63032 1.20133 0.98456 0.95197 0.95339 0.91709 0.90712 0.95597 0.92084 0.88637 0.91030 0.82949 0.82275 0.83998 0.75205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.85 11.15 21.84 0.24 -49.61 15 2 C 0.02 1.26 5.14 85.27 0.44 1.69 15 3 Si 0.97 41.95 29.58 68.60 2.03 43.98 15 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 15 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 7 C -0.47 -26.34 7.36 23.36 0.17 -26.16 15 8 H 0.07 3.67 6.09 -2.91 -0.02 3.66 15 9 C 0.05 2.59 5.51 -20.33 -0.11 2.48 15 10 C -0.32 -18.00 8.76 25.16 0.22 -17.77 15 11 C -0.05 -2.36 6.06 29.65 0.18 -2.18 15 12 C -0.07 -2.49 5.91 29.68 0.18 -2.32 15 13 C -0.09 -3.54 5.66 -19.76 -0.11 -3.66 15 14 C -0.13 -4.09 9.70 22.25 0.22 -3.88 15 15 C -0.11 -3.24 10.03 22.30 0.22 -3.01 15 16 C -0.16 -5.46 9.99 22.37 0.22 -5.24 15 17 C 0.09 4.01 6.66 22.73 0.15 4.16 15 18 O -0.50 -21.99 11.19 -91.68 -1.03 -23.02 15 19 C -0.09 -4.36 5.76 -19.98 -0.12 -4.48 15 20 H 0.27 14.83 8.30 -92.71 -0.77 14.06 15 21 H 0.07 4.57 6.37 -2.91 -0.02 4.55 15 22 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 23 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.10 2.76 8.06 -2.39 -0.02 2.74 15 25 H 0.07 2.56 8.14 -2.38 -0.02 2.54 15 26 H 0.15 3.52 8.06 -2.91 -0.02 3.49 15 27 H 0.16 3.15 8.06 -2.91 -0.02 3.12 15 28 H 0.14 3.98 8.06 -2.91 -0.02 3.96 15 29 H 0.39 14.21 7.85 -74.05 -0.58 13.63 15 Total: -1.00 -68.49 245.04 3.49 -64.99 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.59 Total: 24.03 kcal Atomic # 6 Polarization: -62.03 SS G_CDS: 1.66 Total: -60.37 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.24 Total: -49.61 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.03 Total: -23.02 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -68.49 3.49 -64.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291360.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.906 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds