Wall clock time and date at job start Mon Mar 30 2020 02:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33994 * 124.92626 * 2 1 4 4 C 1.46776 * 106.18660 * 179.97438 * 3 2 1 5 5 C 1.39407 * 134.37054 * 179.97438 * 4 3 2 6 6 C 1.36741 * 119.71923 * 179.97438 * 5 4 3 7 7 C 1.38744 * 120.41547 * 0.25449 * 6 5 4 8 8 C 1.50696 * 119.65549 * 179.74308 * 7 6 5 9 9 C 1.50703 * 109.46863 * 90.00283 * 8 7 6 10 10 H 1.08000 * 120.00340 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99708 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00334 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99875 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47104 * 59.99985 * 13 11 9 15 15 H 1.48492 * 109.47159 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47331 * 300.00629 * 13 11 9 17 17 C 1.37854 * 120.68182 * 359.46552 * 7 6 5 18 18 C 1.38937 * 119.82105 * 0.54971 * 17 7 6 19 19 O 1.34459 * 124.92250 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47503 * 90.00726 * 1 2 3 21 21 H 1.09004 * 109.47660 * 210.00920 * 1 2 3 22 22 H 1.09005 * 109.47033 * 330.00691 * 1 2 3 23 23 H 1.08002 * 126.90318 * 359.96990 * 3 2 1 24 24 H 1.08000 * 120.13964 * 0.02562 * 5 4 3 25 25 H 1.08002 * 119.78994 * 179.97438 * 6 5 4 26 26 H 1.09006 * 109.47311 * 209.99882 * 8 7 6 27 27 H 1.08999 * 109.47631 * 330.00048 * 8 7 6 28 28 H 0.96998 * 120.00265 * 179.97438 * 12 11 9 29 29 H 1.07997 * 120.08636 * 180.26130 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2741 1.0986 0.0000 4 6 3.6640 0.6271 0.0006 5 6 4.9074 1.2576 0.0005 6 6 6.0491 0.5050 0.0018 7 6 5.9771 -0.8805 -0.0021 8 6 7.2462 -1.6931 -0.0064 9 6 7.6714 -1.9681 1.4130 10 1 7.0819 -1.5917 2.2359 11 6 8.8132 -2.7002 1.6610 12 7 9.5313 -3.1581 0.6590 13 14 9.3407 -3.0405 3.4204 14 1 8.2709 -3.7958 4.1206 15 1 10.5912 -3.8413 3.4161 16 1 9.5795 -1.7543 4.1231 17 6 4.7566 -1.5215 0.0038 18 6 3.5844 -0.7756 0.0021 19 8 2.2767 -1.1025 0.0005 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3634 -0.8899 0.5140 22 1 -0.3633 0.8901 0.5137 23 1 1.9373 2.1248 -0.0005 24 1 4.9686 2.3358 0.0002 25 1 7.0129 0.9923 0.0012 26 1 7.0715 -2.6371 -0.5227 27 1 8.0313 -1.1381 -0.5199 28 1 10.3347 -3.6729 0.8335 29 1 4.7118 -2.6006 0.0050 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261293165.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:08 Heat of formation + Delta-G solvation = 10.356938 kcal Electronic energy + Delta-G solvation = -13407.912762 eV Core-core repulsion = 11068.775969 eV Total energy + Delta-G solvation = -2339.136793 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99309 -37.64242 -33.47395 -32.86448 -31.29319 -29.83777 -28.42327 -25.67830 -22.86483 -22.47471 -21.00788 -19.73480 -16.62411 -16.30649 -16.27850 -15.86238 -14.79183 -14.24359 -13.68857 -13.25818 -13.13309 -13.01018 -12.53825 -12.42804 -11.95430 -11.47305 -11.28058 -11.18649 -10.77380 -10.61643 -10.33717 -9.79248 -9.57432 -9.21943 -8.44307 -7.99732 -7.44136 -6.06208 -4.10639 1.46823 2.00345 2.74144 3.07959 3.31867 3.35748 3.39399 4.32269 4.49180 4.70397 5.12415 5.20618 5.28398 5.36037 5.45790 5.51122 5.67022 5.81050 5.95220 6.11867 6.26554 6.45468 6.72442 6.85950 7.00475 7.09072 7.26281 7.48555 7.70762 7.78474 7.89142 8.27464 8.94048 9.53317 11.03422 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.049720 B = 0.006422 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.017175 B = 4359.176027 C = 4516.699836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 C -0.206 4.206 4 C -0.158 4.158 5 C -0.080 4.080 6 C -0.130 4.130 7 C -0.005 4.005 8 C 0.049 3.951 9 C -0.515 4.515 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.120 4.120 18 C 0.055 3.945 19 O -0.199 6.199 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.149 0.851 24 H 0.117 0.883 25 H 0.127 0.873 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.263 0.737 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 7.162 -1.758 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.038 4.038 3 C -0.225 4.225 4 C -0.159 4.159 5 C -0.098 4.098 6 C -0.148 4.148 7 C -0.006 4.006 8 C 0.012 3.988 9 C -0.553 4.553 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.724 3.276 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.138 4.138 18 C 0.009 3.991 19 O -0.102 6.102 20 H 0.098 0.902 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.167 0.833 24 H 0.135 0.865 25 H 0.144 0.856 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.545 6.785 -1.801 15.256 hybrid contribution 0.407 -0.052 0.995 1.076 sum -13.137 6.733 -0.806 14.785 Atomic orbital electron populations 1.20327 0.85467 1.03907 1.03363 1.22147 0.93723 0.84222 1.03737 1.22117 0.91089 0.98659 1.10637 1.19760 0.93768 0.93088 1.09253 1.20172 0.90330 0.99149 1.00157 1.20802 0.97968 0.93816 1.02180 1.20510 0.95619 0.93916 0.90514 1.18392 0.87944 0.94438 0.97993 1.21012 1.08945 1.33990 0.91326 0.92403 1.25002 0.96327 0.95575 0.97326 1.69939 1.16244 1.36318 1.30728 0.86573 0.77904 0.78427 0.84660 1.20127 1.21195 1.20127 1.19877 0.87317 0.99748 1.06875 1.19702 0.82493 0.93692 1.03239 1.83887 1.15543 1.33813 1.76962 0.90180 0.90555 0.89500 0.83344 0.86477 0.85553 0.94982 0.94780 0.92708 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.39 36.00 0.37 -0.31 15 2 C 0.01 0.13 7.23 -35.80 -0.26 -0.13 15 3 C -0.21 -3.11 11.01 -37.63 -0.41 -3.52 15 4 C -0.16 -2.91 6.40 -105.16 -0.67 -3.59 15 5 C -0.08 -1.42 10.05 -39.69 -0.40 -1.82 15 6 C -0.13 -2.57 9.62 -39.94 -0.38 -2.95 15 7 C -0.01 -0.12 5.07 -104.58 -0.53 -0.65 15 8 C 0.05 1.26 5.08 -29.04 -0.15 1.11 15 9 C -0.51 -14.41 9.09 -34.44 -0.31 -14.73 15 10 H 0.06 1.61 7.74 -52.49 -0.41 1.21 15 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 12 N -0.89 -26.25 13.29 55.43 0.74 -25.52 15 13 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 15 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 17 C -0.12 -2.54 9.70 -39.46 -0.38 -2.93 15 18 C 0.06 1.10 7.42 -38.47 -0.29 0.82 15 19 O -0.20 -3.63 10.58 3.91 0.04 -3.59 15 20 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.09 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.15 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 25 H 0.13 2.35 8.06 -52.49 -0.42 1.93 15 26 H 0.03 0.86 8.08 -51.93 -0.42 0.44 15 27 H 0.03 0.90 8.08 -51.93 -0.42 0.48 15 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 29 H 0.13 2.62 8.06 -52.49 -0.42 2.20 15 LS Contribution 260.10 15.07 3.92 3.92 Total: -1.00 -30.79 260.10 -7.17 -37.97 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -3.34 Total: -2.20 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -3.51 Total: -27.11 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.79 -7.17 -37.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293165.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.325 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds