Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33994 * 124.92626 * 2 1 4 4 C 1.46776 * 106.18660 * 179.97438 * 3 2 1 5 5 C 1.39407 * 134.37054 * 179.97438 * 4 3 2 6 6 C 1.36741 * 119.71923 * 179.97438 * 5 4 3 7 7 C 1.38744 * 120.41547 * 0.25449 * 6 5 4 8 8 C 1.50696 * 119.65549 * 179.74308 * 7 6 5 9 9 C 1.50703 * 109.46863 * 90.00283 * 8 7 6 10 10 H 1.08000 * 120.00340 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99708 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00334 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99875 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47104 * 59.99985 * 13 11 9 15 15 H 1.48492 * 109.47159 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47331 * 300.00629 * 13 11 9 17 17 C 1.37854 * 120.68182 * 359.46552 * 7 6 5 18 18 C 1.38937 * 119.82105 * 0.54971 * 17 7 6 19 19 O 1.34459 * 124.92250 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47503 * 90.00726 * 1 2 3 21 21 H 1.09004 * 109.47660 * 210.00920 * 1 2 3 22 22 H 1.09005 * 109.47033 * 330.00691 * 1 2 3 23 23 H 1.08002 * 126.90318 * 359.96990 * 3 2 1 24 24 H 1.08000 * 120.13964 * 0.02562 * 5 4 3 25 25 H 1.08002 * 119.78994 * 179.97438 * 6 5 4 26 26 H 1.09006 * 109.47311 * 209.99882 * 8 7 6 27 27 H 1.08999 * 109.47631 * 330.00048 * 8 7 6 28 28 H 0.96998 * 120.00265 * 179.97438 * 12 11 9 29 29 H 1.07997 * 120.08636 * 180.26130 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2741 1.0986 0.0000 4 6 3.6640 0.6271 0.0006 5 6 4.9074 1.2576 0.0005 6 6 6.0491 0.5050 0.0018 7 6 5.9771 -0.8805 -0.0021 8 6 7.2462 -1.6931 -0.0064 9 6 7.6714 -1.9681 1.4130 10 1 7.0819 -1.5917 2.2359 11 6 8.8132 -2.7002 1.6610 12 7 9.5313 -3.1581 0.6590 13 14 9.3407 -3.0405 3.4204 14 1 8.2709 -3.7958 4.1206 15 1 10.5912 -3.8413 3.4161 16 1 9.5795 -1.7543 4.1231 17 6 4.7566 -1.5215 0.0038 18 6 3.5844 -0.7756 0.0021 19 8 2.2767 -1.1025 0.0005 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3634 -0.8899 0.5140 22 1 -0.3633 0.8901 0.5137 23 1 1.9373 2.1248 -0.0005 24 1 4.9686 2.3358 0.0002 25 1 7.0129 0.9923 0.0012 26 1 7.0715 -2.6371 -0.5227 27 1 8.0313 -1.1381 -0.5199 28 1 10.3347 -3.6729 0.8335 29 1 4.7118 -2.6006 0.0050 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293165.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -6.761868 kcal Electronic energy + Delta-G solvation = -13408.655089 eV Core-core repulsion = 11068.775969 eV Total energy + Delta-G solvation = -2339.879120 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.34665 -39.19484 -35.40685 -34.19588 -32.85344 -31.32616 -29.96773 -27.26764 -24.72799 -23.92438 -22.40065 -21.19702 -18.54691 -18.03039 -17.62519 -17.20011 -16.65174 -15.86956 -15.07804 -14.67568 -14.52085 -14.01266 -13.92699 -13.80742 -13.40022 -13.26336 -12.92432 -12.65369 -12.58785 -12.47660 -12.04851 -11.63112 -11.48049 -10.75792 -10.62080 -9.50641 -8.89550 -8.21245 -6.35780 0.06140 0.46387 1.38857 1.42082 1.45553 1.51004 1.80515 2.38723 2.84858 3.08818 3.53677 3.79598 4.13059 4.22359 4.33101 4.42651 4.49251 4.63930 4.74609 4.87314 4.95381 5.05249 5.22545 5.30649 5.31578 5.45972 5.62280 5.71116 5.80847 5.93356 6.13022 6.30045 6.75530 7.32654 8.87085 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.049720 B = 0.006422 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.017175 B = 4359.176027 C = 4516.699836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.012 3.988 3 C -0.211 4.211 4 C -0.162 4.162 5 C -0.068 4.068 6 C -0.141 4.141 7 C -0.032 4.032 8 C 0.059 3.941 9 C -0.533 4.533 10 H 0.054 0.946 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.966 3.034 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.266 1.266 17 C -0.133 4.133 18 C 0.031 3.969 19 O -0.216 6.216 20 H 0.100 0.900 21 H 0.082 0.918 22 H 0.117 0.883 23 H 0.189 0.811 24 H 0.158 0.842 25 H 0.133 0.867 26 H 0.005 0.995 27 H 0.016 0.984 28 H 0.267 0.733 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.762 9.053 -0.773 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.034 4.034 3 C -0.229 4.229 4 C -0.163 4.163 5 C -0.086 4.086 6 C -0.159 4.159 7 C -0.033 4.033 8 C 0.022 3.978 9 C -0.571 4.571 10 H 0.072 0.928 11 C -0.192 4.192 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.191 1.191 17 C -0.151 4.151 18 C -0.015 4.015 19 O -0.119 6.119 20 H 0.119 0.881 21 H 0.101 0.899 22 H 0.135 0.865 23 H 0.206 0.794 24 H 0.175 0.825 25 H 0.151 0.849 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.708 8.683 -0.821 17.967 hybrid contribution 0.905 -0.612 0.629 1.261 sum -14.803 8.071 -0.191 16.861 Atomic orbital electron populations 1.20627 0.81321 1.05719 1.05213 1.23297 0.95856 0.83086 1.01199 1.22535 0.88866 1.00689 1.10858 1.20285 0.95771 0.92521 1.07694 1.20507 0.89179 1.00920 0.97972 1.20881 0.99392 0.92791 1.02802 1.20185 0.94326 0.94941 0.93818 1.18119 0.89457 0.93570 0.96667 1.21320 1.09269 1.34248 0.92250 0.92820 1.25908 0.96246 0.95150 1.01860 1.70059 1.16723 1.36926 1.33036 0.85486 0.77667 0.78648 0.79189 1.19546 1.20342 1.19082 1.19754 0.88183 0.99452 1.07747 1.19683 0.82964 0.94588 1.04301 1.83896 1.15005 1.35878 1.77124 0.88123 0.89950 0.86455 0.79427 0.82462 0.84935 0.97624 0.96600 0.92421 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.39 71.23 0.74 -0.28 15 2 C 0.01 0.32 7.23 24.72 0.18 0.50 15 3 C -0.21 -5.57 11.01 23.54 0.26 -5.31 15 4 C -0.16 -5.66 6.40 -20.21 -0.13 -5.79 15 5 C -0.07 -2.29 10.05 22.20 0.22 -2.07 15 6 C -0.14 -5.62 9.62 22.04 0.21 -5.40 15 7 C -0.03 -1.51 5.07 -19.84 -0.10 -1.61 15 8 C 0.06 3.21 5.08 29.10 0.15 3.36 15 9 C -0.53 -30.97 9.09 25.60 0.23 -30.74 15 10 H 0.05 3.08 7.74 -2.91 -0.02 3.06 15 11 C 0.01 0.40 5.46 84.66 0.46 0.86 15 12 N -0.93 -56.11 13.29 21.45 0.28 -55.82 15 13 Si 0.97 44.67 29.54 68.60 2.03 46.69 15 14 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 15 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 17 C -0.13 -5.92 9.70 22.35 0.22 -5.70 15 18 C 0.03 1.25 7.42 22.99 0.17 1.42 15 19 O -0.22 -7.66 10.58 -8.93 -0.09 -7.76 15 20 H 0.10 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.08 1.10 8.14 -2.38 -0.02 1.08 15 22 H 0.12 0.99 8.14 -2.38 -0.02 0.97 15 23 H 0.19 3.38 8.06 -2.91 -0.02 3.35 15 24 H 0.16 3.97 8.06 -2.91 -0.02 3.95 15 25 H 0.13 4.98 8.06 -2.91 -0.02 4.96 15 26 H 0.01 0.32 8.08 -2.38 -0.02 0.30 15 27 H 0.02 0.89 8.08 -2.39 -0.02 0.87 15 28 H 0.27 15.12 8.31 -92.71 -0.77 14.35 15 29 H 0.12 5.19 8.06 -2.91 -0.02 5.17 15 Total: -1.00 -68.79 260.10 5.97 -62.82 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.14 Total: 4.83 kcal Atomic # 6 Polarization: -53.38 SS G_CDS: 2.61 Total: -50.77 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.28 Total: -55.82 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.09 Total: -7.76 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.79 5.97 -62.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293165.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.060 kcal (2) G-P(sol) polarization free energy of solvation -68.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds