Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36576 * 120.12821 * 2 1 4 4 C 1.38817 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38122 * 120.73417 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.03107 * 180.02562 * 5 4 3 7 7 C 1.38683 * 119.93407 * 0.02562 * 5 4 3 8 8 O 1.35043 * 132.80090 * 180.02562 * 7 5 4 9 9 C 1.35143 * 109.92756 * 180.02562 * 8 7 5 10 10 C 1.39715 * 125.53386 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99807 * 174.18953 * 10 9 8 12 12 C 1.40268 * 120.00383 * 354.19206 * 10 9 8 13 13 N 1.30713 * 119.99569 * 6.04662 * 12 10 9 14 14 Si 1.86795 * 120.00477 * 186.04665 * 12 10 9 15 15 H 1.48494 * 109.47127 * 94.98051 * 14 12 10 16 16 H 1.48506 * 109.47340 * 214.98412 * 14 12 10 17 17 H 1.48502 * 109.47045 * 334.98210 * 14 12 10 18 18 C 1.39020 * 108.92757 * 0.02562 * 9 8 7 19 19 C 1.40230 * 120.12506 * 179.73059 * 2 1 3 20 20 H 1.09004 * 109.47249 * 89.99283 * 1 2 3 21 21 H 1.08999 * 109.47112 * 329.99940 * 1 2 3 22 22 H 1.08997 * 109.47147 * 209.99630 * 1 2 3 23 23 H 1.07999 * 119.76654 * 0.02562 * 3 2 1 24 24 H 1.08000 * 119.63624 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.46911 * 89.99659 * 6 5 4 26 26 H 1.09003 * 109.46771 * 209.98976 * 6 5 4 27 27 H 1.08996 * 109.47240 * 329.99800 * 6 5 4 28 28 H 0.96998 * 119.99931 * 179.97438 * 13 12 10 29 29 H 1.07998 * 126.69450 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1812 0.0000 4 6 3.5807 1.1896 0.0005 5 6 4.2937 0.0066 0.0005 6 6 5.8004 0.0342 0.0017 7 6 3.6216 -1.2065 -0.0005 8 8 4.0436 -2.4893 -0.0003 9 6 2.9807 -3.3239 -0.0023 10 6 3.0442 -4.7196 -0.0022 11 1 2.1391 -5.3013 0.0907 12 6 4.2836 -5.3653 -0.1229 13 7 5.3880 -4.6663 -0.1164 14 14 4.3557 -7.2241 -0.2928 15 1 4.4257 -7.5874 -1.7309 16 1 5.5601 -7.7389 0.4071 17 1 3.1385 -7.8239 0.3106 18 6 1.8139 -2.5681 -0.0045 19 6 2.2108 -1.2129 0.0057 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5138 23 1 1.6508 2.1156 0.0004 24 1 4.1091 2.1315 0.0009 25 1 6.1629 0.0404 1.0297 26 1 6.1803 -0.8489 -0.5121 27 1 6.1478 0.9308 -0.5115 28 1 6.2451 -5.1128 -0.1995 29 1 0.8015 -2.9440 -0.0068 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261293222.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -10.125635 kcal Electronic energy + Delta-G solvation = -13914.992888 eV Core-core repulsion = 11574.967905 eV Total energy + Delta-G solvation = -2340.024984 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.69382 -36.98765 -33.90744 -33.15023 -30.35654 -29.08188 -28.41599 -25.34872 -23.90587 -21.24221 -20.89348 -18.69214 -17.77620 -15.87668 -15.26356 -14.73357 -14.49783 -14.13019 -13.21433 -12.75995 -12.56463 -12.49475 -12.26821 -12.00043 -11.65528 -11.52122 -11.26465 -11.07596 -10.81791 -10.52490 -10.41069 -10.23444 -9.71264 -9.66800 -8.59181 -7.41493 -7.11411 -6.89462 -4.63525 2.13441 2.62582 2.85535 2.91347 2.96661 3.68603 3.73905 4.52956 4.79400 5.06092 5.67352 5.70076 5.93579 6.02698 6.12001 6.26575 6.30991 6.31048 6.48333 6.57912 6.59653 6.76360 6.84646 7.07441 7.23994 7.29483 7.52712 7.66103 7.69186 7.85084 8.04836 8.36368 8.46426 9.00886 9.85884 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.039265 B = 0.009311 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.931032 B = 3006.558360 C = 3696.480878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.181 4.181 5 C -0.059 4.059 6 C -0.104 4.104 7 C -0.022 4.022 8 O -0.168 6.168 9 C 0.241 3.759 10 C -0.428 4.428 11 H 0.111 0.889 12 C 0.065 3.935 13 N -0.758 5.758 14 Si 0.929 3.071 15 H -0.264 1.264 16 H -0.272 1.272 17 H -0.256 1.256 18 C -0.420 4.420 19 C -0.037 4.037 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.103 0.897 24 H 0.109 0.891 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.290 0.710 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 2.769 -0.138 2.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.139 4.139 4 C -0.199 4.199 5 C -0.060 4.060 6 C -0.161 4.161 7 C -0.069 4.069 8 O -0.069 6.069 9 C 0.190 3.810 10 C -0.456 4.456 11 H 0.129 0.871 12 C -0.159 4.159 13 N -0.381 5.381 14 Si 0.751 3.249 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.180 1.180 18 C -0.440 4.440 19 C -0.038 4.038 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.121 0.879 24 H 0.127 0.873 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.397 2.708 -0.142 2.741 hybrid contribution -0.029 -0.717 -0.079 0.722 sum -0.426 1.991 -0.221 2.048 Atomic orbital electron populations 1.20494 0.92657 1.01110 1.00727 1.18853 0.94693 0.91562 1.07511 1.20186 0.93851 0.96210 1.03613 1.20194 0.93595 0.95371 1.10777 1.18519 0.94799 0.89208 1.03445 1.20621 0.92232 1.01789 1.01426 1.19543 0.92616 0.85192 1.09520 1.84608 1.33373 1.12221 1.76647 1.19587 0.82622 0.90168 0.88585 1.19025 0.95049 0.87862 1.43658 0.87126 1.26300 0.94911 1.02513 0.92139 1.69739 0.99251 1.39009 1.30120 0.85942 0.79408 0.79884 0.79628 1.18915 1.19696 1.17961 1.20931 0.97246 0.90288 1.35551 1.18641 0.92698 0.93702 0.98779 0.92793 0.93133 0.92334 0.87853 0.87317 0.92208 0.91588 0.92618 0.89913 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.93 36.01 0.36 -1.33 15 2 C -0.13 -2.78 5.89 -104.47 -0.62 -3.39 15 3 C -0.12 -2.42 9.62 -39.97 -0.38 -2.81 15 4 C -0.18 -3.67 9.68 -39.41 -0.38 -4.05 15 5 C -0.06 -1.34 5.89 -104.50 -0.62 -1.95 15 6 C -0.10 -2.00 10.02 36.01 0.36 -1.64 15 7 C -0.02 -0.57 7.03 -38.34 -0.27 -0.84 15 8 O -0.17 -4.77 8.92 1.27 0.01 -4.76 15 9 C 0.24 6.69 6.74 -38.74 -0.26 6.43 15 10 C -0.43 -11.07 9.29 -38.27 -0.36 -11.43 15 11 H 0.11 2.63 7.86 -52.49 -0.41 2.22 15 12 C 0.07 1.57 5.49 -17.27 -0.09 1.48 15 13 N -0.76 -19.29 11.98 55.57 0.67 -18.63 15 14 Si 0.93 17.49 29.57 -169.99 -5.03 12.46 15 15 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 16 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 17 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 18 C -0.42 -11.05 10.55 -38.16 -0.40 -11.45 15 19 C -0.04 -0.95 5.99 -106.94 -0.64 -1.59 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.05 0.78 8.08 -51.93 -0.42 0.36 15 22 H 0.06 1.07 7.86 -51.93 -0.41 0.66 15 23 H 0.10 1.74 8.06 -52.49 -0.42 1.32 15 24 H 0.11 1.85 8.06 -52.49 -0.42 1.43 15 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 15 26 H 0.07 1.35 8.09 -51.93 -0.42 0.93 15 27 H 0.05 0.89 8.09 -51.93 -0.42 0.47 15 28 H 0.29 6.55 8.29 -40.82 -0.34 6.21 15 29 H 0.12 2.95 8.06 -52.49 -0.42 2.52 15 LS Contribution 256.65 15.07 3.87 3.87 Total: -1.00 -28.63 256.65 -7.11 -35.74 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.33 Total: 3.88 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -3.30 Total: -32.57 kcal Atomic # 7 Polarization: -19.29 SS G_CDS: 0.67 Total: -18.63 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: 0.01 Total: -4.76 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.63 -7.11 -35.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293222.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.617 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds