Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30789 * 1 3 3 Si 1.86802 * 120.00099 * 2 1 4 4 H 1.48506 * 109.47028 * 270.00001 * 3 2 1 5 5 H 1.48499 * 109.47057 * 29.99476 * 3 2 1 6 6 H 1.48503 * 109.47380 * 150.00052 * 3 2 1 7 7 C 1.40023 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00521 * 197.57054 * 7 2 1 9 9 C 1.40939 * 120.00032 * 17.56966 * 7 2 1 10 10 C 1.36300 * 120.52043 * 25.25576 * 9 7 2 11 11 C 1.50406 * 120.44381 * 180.67145 * 10 9 7 12 12 C 1.52671 * 110.64717 * 323.94497 * 11 10 9 13 13 C 1.50434 * 110.23206 * 51.15929 * 12 11 10 14 14 C 1.38451 * 120.59512 * 144.84980 * 13 12 11 15 15 O 1.35903 * 120.06238 * 359.91462 * 14 13 12 16 16 C 1.38851 * 119.87913 * 179.89170 * 14 13 12 17 17 C 1.38250 * 120.30809 * 0.02562 * 16 14 13 18 18 C 1.38147 * 120.17212 * 0.05050 * 17 16 14 19 19 C 1.39088 * 119.78465 * 359.95238 * 18 17 16 20 20 H 0.97001 * 119.99834 * 0.02562 * 1 2 3 21 21 H 1.07997 * 119.77540 * 0.65417 * 10 9 7 22 22 H 1.09007 * 109.22939 * 84.22682 * 11 10 9 23 23 H 1.08995 * 109.24043 * 203.65345 * 11 10 9 24 24 H 1.09007 * 109.35043 * 171.34586 * 12 11 10 25 25 H 1.09003 * 109.35239 * 290.90840 * 12 11 10 26 26 H 0.96703 * 114.00016 * 89.99658 * 15 14 13 27 27 H 1.07992 * 119.84911 * 179.97438 * 16 14 13 28 28 H 1.07997 * 119.91570 * 180.02562 * 17 16 14 29 29 H 1.08003 * 120.10657 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0464 -1.4001 5 1 1.4393 2.6527 0.6999 6 1 3.5395 1.4402 0.7000 7 6 2.0080 -1.2126 0.0005 8 1 3.0503 -1.2343 0.2829 9 6 1.3527 -2.4049 -0.3674 10 6 0.2636 -2.3718 -1.1862 11 6 -0.4435 -3.6439 -1.5656 12 6 0.5563 -4.7847 -1.7381 13 6 1.4510 -4.8791 -0.5324 14 6 1.8935 -6.1098 -0.0779 15 8 1.5193 -7.2475 -0.7201 16 6 2.7207 -6.1794 1.0352 17 6 3.1045 -5.0253 1.6925 18 6 2.6661 -3.7936 1.2463 19 6 1.8373 -3.7174 0.1319 20 1 -0.4850 0.8401 -0.0004 21 1 -0.0942 -1.4258 -1.5649 22 1 -1.1557 -3.9059 -0.7831 23 1 -0.9793 -3.4914 -2.5024 24 1 0.0157 -5.7234 -1.8600 25 1 1.1633 -4.6021 -2.6249 26 1 2.1203 -7.5148 -1.4290 27 1 3.0652 -7.1396 1.3896 28 1 3.7484 -5.0869 2.5573 29 1 2.9669 -2.8927 1.7604 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261294131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = -40.081153 kcal Electronic energy + Delta-G solvation = -13975.878862 eV Core-core repulsion = 11634.554909 eV Total energy + Delta-G solvation = -2341.323952 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95168 -38.12287 -36.51029 -35.21785 -32.22954 -30.65628 -29.46092 -27.05417 -24.12176 -23.24697 -22.39908 -19.72790 -19.22356 -17.34988 -17.16191 -16.60858 -16.50774 -16.09426 -14.99457 -14.88800 -14.35540 -13.91145 -13.59747 -13.10595 -13.00128 -12.90768 -12.81093 -12.63697 -12.25691 -12.07997 -11.79744 -11.15483 -10.97121 -10.88461 -10.20614 -9.35964 -8.60488 -8.47585 -6.19234 0.31426 0.46680 1.33280 1.39089 1.50774 2.07350 2.27465 2.84834 3.37823 3.53712 3.97557 4.11102 4.29946 4.47260 4.52358 4.65651 4.72593 4.81054 5.05076 5.15914 5.23806 5.27969 5.35533 5.51137 5.55577 5.66229 5.83293 5.98419 6.17923 6.37108 6.89907 6.95025 7.11847 7.30503 8.53126 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.009631 C = 0.008085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.260139 B = 2906.502901 C = 3462.218123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.029 3.971 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.494 4.494 8 H 0.067 0.933 9 C 0.040 3.960 10 C -0.323 4.323 11 C -0.052 4.052 12 C -0.063 4.063 13 C -0.130 4.130 14 C 0.099 3.901 15 O -0.500 6.500 16 C -0.159 4.159 17 C -0.107 4.107 18 C -0.135 4.135 19 C -0.039 4.039 20 H 0.278 0.722 21 H 0.083 0.917 22 H 0.025 0.975 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.405 0.595 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 -8.483 -0.387 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.085 0.915 9 C 0.039 3.961 10 C -0.345 4.345 11 C -0.089 4.089 12 C -0.100 4.100 13 C -0.131 4.131 14 C 0.054 3.946 15 O -0.312 6.312 16 C -0.177 4.177 17 C -0.125 4.125 18 C -0.153 4.153 19 C -0.039 4.039 20 H 0.088 0.912 21 H 0.101 0.899 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.263 0.737 27 H 0.171 0.829 28 H 0.171 0.829 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.614 -8.348 0.020 9.538 hybrid contribution 0.335 1.170 -0.294 1.252 sum 4.949 -7.177 -0.274 8.722 Atomic orbital electron populations 1.69937 1.08886 1.29276 1.38536 1.26566 0.95357 1.03929 0.92369 0.85345 0.79151 0.76891 0.79095 1.19282 1.19800 1.18167 1.19432 0.97513 0.92370 1.43189 0.91500 1.17903 0.95230 0.89932 0.93052 1.22890 1.05915 0.96062 1.09632 1.19923 0.96435 0.93579 0.98938 1.20170 0.96275 0.98850 0.94679 1.20482 1.00899 0.92278 0.99403 1.18210 0.97153 0.84505 0.94696 1.84718 1.53995 1.39476 1.53049 1.21551 0.99326 0.99805 0.97007 1.21239 0.99948 0.90954 1.00314 1.21349 0.98441 0.98626 0.96913 1.19575 0.95407 0.93863 0.95046 0.91176 0.89879 0.95626 0.92051 0.89686 0.91197 0.73683 0.82912 0.82900 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.38 11.02 21.84 0.24 -47.14 15 2 C 0.03 1.58 5.12 85.28 0.44 2.02 15 3 Si 0.97 40.89 29.59 68.60 2.03 42.92 15 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 7 C -0.49 -27.69 8.25 23.36 0.19 -27.50 15 8 H 0.07 3.61 7.46 -2.91 -0.02 3.59 15 9 C 0.04 2.23 5.57 -20.31 -0.11 2.12 15 10 C -0.32 -17.79 8.80 25.14 0.22 -17.57 15 11 C -0.05 -2.36 6.06 29.65 0.18 -2.18 15 12 C -0.06 -2.47 5.74 29.66 0.17 -2.30 15 13 C -0.13 -5.44 5.68 -19.64 -0.11 -5.55 15 14 C 0.10 3.41 6.68 22.47 0.15 3.56 15 15 O -0.50 -13.99 12.50 -92.46 -1.16 -15.15 15 16 C -0.16 -4.87 9.98 22.42 0.22 -4.65 15 17 C -0.11 -3.50 10.03 22.25 0.22 -3.27 15 18 C -0.14 -5.70 9.41 22.45 0.21 -5.49 15 19 C -0.04 -1.86 5.75 -20.07 -0.12 -1.97 15 20 H 0.28 14.40 8.30 -92.71 -0.77 13.63 15 21 H 0.08 4.99 6.13 -2.91 -0.02 4.98 15 22 H 0.03 1.20 8.14 -2.38 -0.02 1.18 15 23 H 0.06 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.08 2.92 7.40 -2.38 -0.02 2.90 15 25 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 26 H 0.41 7.06 9.06 -74.06 -0.67 6.38 15 27 H 0.15 3.56 8.06 -2.91 -0.02 3.53 15 28 H 0.15 3.80 8.06 -2.91 -0.02 3.78 15 29 H 0.12 5.00 7.19 -2.91 -0.02 4.98 15 Total: -1.00 -65.67 247.56 3.28 -62.39 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.50 Total: 19.79 kcal Atomic # 6 Polarization: -64.47 SS G_CDS: 1.67 Total: -62.80 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.24 Total: -47.14 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.16 Total: -15.15 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -65.67 3.28 -62.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261294131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.305 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds