Wall clock time and date at job start Mon Mar 30 2020 02:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33998 * 126.90569 * 2 1 4 4 O 1.34443 * 110.15414 * 180.02562 * 3 2 1 5 5 C 1.34808 * 110.89160 * 0.02562 * 4 3 2 6 6 C 1.38943 * 133.50066 * 179.97438 * 5 4 3 7 7 C 1.37845 * 119.81843 * 179.97438 * 6 5 4 8 8 C 1.38742 * 120.68925 * 0.03228 * 7 6 5 9 9 C 1.50691 * 119.79550 * 180.25724 * 8 7 6 10 10 C 1.50704 * 109.47346 * 269.73228 * 9 8 7 11 11 H 1.08000 * 119.99648 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00227 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00030 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00285 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47050 * 89.99737 * 14 12 10 16 16 H 1.48500 * 109.47687 * 209.99623 * 14 12 10 17 17 H 1.48501 * 109.46988 * 330.00153 * 14 12 10 18 18 C 1.36745 * 120.41234 * 359.97438 * 8 7 6 19 19 C 1.39404 * 119.71971 * 359.97438 * 18 8 7 20 20 H 1.09000 * 109.47448 * 269.99748 * 1 2 3 21 21 H 1.09008 * 109.47466 * 29.99759 * 1 2 3 22 22 H 1.08999 * 109.47348 * 149.99584 * 1 2 3 23 23 H 1.08003 * 124.92067 * 359.97438 * 3 2 1 24 24 H 1.08000 * 120.08501 * 0.02562 * 6 5 4 25 25 H 1.08001 * 119.65772 * 180.02562 * 7 6 5 26 26 H 1.08997 * 109.47018 * 29.72517 * 9 8 7 27 27 H 1.08992 * 109.47564 * 149.72867 * 9 8 7 28 28 H 0.97007 * 120.00106 * 180.02562 * 13 12 10 29 29 H 1.07998 * 120.13576 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0715 0.0000 4 8 3.5990 0.6840 -0.0006 5 6 3.6963 -0.6606 -0.0015 6 6 4.7706 -1.5418 -0.0028 7 6 4.5421 -2.9011 -0.0030 8 6 3.2481 -3.4017 -0.0026 9 6 3.0215 -4.8914 0.0030 10 6 2.9411 -5.3927 -1.4160 11 1 3.0434 -4.7015 -2.2394 12 6 2.7359 -6.7336 -1.6628 13 7 2.6108 -7.5752 -0.6600 14 14 2.6355 -7.3549 -3.4216 15 1 3.9931 -7.7305 -3.8921 16 1 1.7462 -8.5428 -3.4771 17 1 2.0877 -6.2852 -4.2939 18 6 2.1770 -2.5515 -0.0015 19 6 2.3884 -1.1736 -0.0002 20 1 -0.3634 0.0000 1.0276 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5139 23 1 1.9748 2.0976 -0.0004 24 1 5.7818 -1.1626 -0.0028 25 1 5.3790 -3.5837 -0.0036 26 1 3.8485 -5.3828 0.5155 27 1 2.0889 -5.1152 0.5207 28 1 2.4668 -8.5187 -0.8337 29 1 1.1717 -2.9460 -0.0016 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261295352.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:36 Heat of formation + Delta-G solvation = 9.664906 kcal Electronic energy + Delta-G solvation = -13510.654111 eV Core-core repulsion = 11171.487310 eV Total energy + Delta-G solvation = -2339.166801 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.98515 -37.61508 -33.71423 -33.19205 -30.88382 -29.54053 -27.06035 -26.78749 -23.46939 -22.31792 -20.56399 -19.67018 -16.65560 -16.48094 -16.30450 -15.72534 -14.86278 -14.19599 -13.60583 -13.40655 -13.04563 -12.87560 -12.48794 -12.38055 -11.78668 -11.63482 -11.26561 -11.12524 -10.69117 -10.60758 -10.23416 -9.61353 -9.45889 -9.43016 -8.43795 -7.77743 -7.58405 -6.05551 -4.09624 1.43266 2.04772 2.70634 3.20347 3.29818 3.36156 3.40596 4.32039 4.49721 4.80755 5.02596 5.17639 5.29131 5.50562 5.70504 5.73091 5.85941 5.95955 6.03149 6.05582 6.23196 6.43953 6.74468 6.84276 7.03330 7.10870 7.24404 7.50519 7.70598 7.80317 7.90242 8.30092 8.95659 9.54497 11.04147 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.039808 B = 0.007161 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.207476 B = 3909.145951 C = 4176.289369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.178 4.178 3 C -0.016 4.016 4 O -0.202 6.202 5 C 0.027 3.973 6 C -0.117 4.117 7 C -0.086 4.086 8 C -0.051 4.051 9 C 0.050 3.950 10 C -0.513 4.513 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.079 4.079 19 C -0.128 4.128 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.198 0.802 24 H 0.122 0.878 25 H 0.132 0.868 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 13.615 1.800 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.180 4.180 3 C -0.081 4.081 4 O -0.104 6.104 5 C -0.020 4.020 6 C -0.135 4.135 7 C -0.104 4.104 8 C -0.051 4.051 9 C 0.014 3.986 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.097 4.097 19 C -0.129 4.129 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.215 0.785 24 H 0.140 0.860 25 H 0.150 0.850 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.861 13.589 1.839 13.740 hybrid contribution -0.201 -0.417 -1.000 1.102 sum -1.062 13.172 0.839 13.241 Atomic orbital electron populations 1.20123 0.89079 1.02576 1.01944 1.21139 0.96469 0.91664 1.08697 1.23504 0.80324 0.99104 1.05160 1.83908 1.27793 1.21518 1.77181 1.19530 0.95773 0.80714 1.05936 1.19842 0.95834 0.91338 1.06508 1.20975 0.97796 0.92945 0.98700 1.20328 0.91654 0.99043 0.94048 1.18335 0.98199 0.84293 0.97803 1.21075 1.49720 0.92803 0.91514 0.92460 1.25002 0.95177 0.96858 0.97222 1.69957 1.49397 1.03342 1.30601 0.86541 0.78033 0.78397 0.84774 1.20557 1.21155 1.19810 1.20184 0.99712 0.89617 1.00235 1.19817 0.92179 0.94269 1.06598 0.91534 0.91827 0.91202 0.78487 0.85973 0.84990 0.95131 0.95228 0.92818 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.43 36.00 0.38 -0.59 15 2 C -0.18 -2.75 6.35 -102.67 -0.65 -3.41 15 3 C -0.02 -0.22 11.89 29.24 0.35 0.12 15 4 O -0.20 -3.37 10.58 3.93 0.04 -3.32 15 5 C 0.03 0.50 7.42 -38.47 -0.29 0.21 15 6 C -0.12 -2.07 10.07 -39.46 -0.40 -2.47 15 7 C -0.09 -1.68 9.66 -39.54 -0.38 -2.06 15 8 C -0.05 -1.11 5.04 -104.98 -0.53 -1.64 15 9 C 0.05 1.29 5.09 -29.04 -0.15 1.14 15 10 C -0.51 -14.31 9.09 -34.44 -0.31 -14.62 15 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 13 N -0.89 -26.24 13.29 55.43 0.74 -25.50 15 14 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 18 C -0.08 -1.64 9.68 -39.69 -0.38 -2.02 15 19 C -0.13 -2.43 6.38 -105.16 -0.67 -3.10 15 20 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.06 0.60 8.14 -51.92 -0.42 0.18 15 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.20 1.75 8.06 -52.48 -0.42 1.33 15 24 H 0.12 1.80 8.06 -52.49 -0.42 1.38 15 25 H 0.13 2.39 8.06 -52.49 -0.42 1.97 15 26 H 0.03 0.81 8.08 -51.93 -0.42 0.39 15 27 H 0.03 0.79 8.08 -51.93 -0.42 0.37 15 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 29 H 0.12 2.43 8.06 -52.49 -0.42 2.01 15 LS Contribution 260.14 15.07 3.92 3.92 Total: -1.00 -30.70 260.14 -6.80 -37.50 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -3.34 Total: -2.17 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -3.14 Total: -26.88 kcal Atomic # 7 Polarization: -26.24 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.70 -6.80 -37.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295352.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.161 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds